| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695389
Identifier: 209695389
GI number: 209695389
Start: 2059548
End: 2060168
Strand: Reverse
Name: 209695389
Synonym: VSAL_I1924
Alternate gene names: NA
Gene position: 2060168-2059548 (Counterclockwise)
Preceding gene: 209695390
Following gene: 209695388
Centisome position: 61.96
GC content: 34.62
Gene sequence:
>621_bases ATGAAAATAATATTTATATCTACTATTTCTATAGCTATTTTATCTACATATACAATAGCAGCAACTACACGATCAGATGG AACAATATCAATCGAGAGTATCGATGCTCCATATACGAAGGATCTAGCGCTATTAGCGACTAGAAGAGTAGTAAACGATG TGGTAATTCATACCAATGAACGTTTAAAGATTATCGACACCAATTTTATAGTAAATGCCCAAAGCATATCAACCGTAGGT AGTAATTTAGGGGCAGCAGGCGACGCTATTCAGGCAAATCATAATGCTTTAGTTGATTTAGAACTTAAAAATTCAATATA TATTGATGAATGGAATAATATGTTTAAGGAATCTATTAGCAAAATTGAATCTCAAATCAGTCAAAATAGAAAAGTATCCT CAAGAGGAATAGCAGGTGTGGCTGCAATGACAAATATCCCTACCCTAACTGATGGTTCATTCTCGGTAGGTATGGGTTAT GGTTATTTCGATGGCGAAGATGCTTTAGCCTTTGGTGTCTCTAAATATTTCAACTCAGGAGTAGCAATAAAAACTTCTTT TGCCACTACTGGAGCTAACAATACGACTCTTGGTATTGGTGCTAGCTATAGTTTTAAATAA
Upstream 100 bases:
>100_bases TTAGGAATGGACCCCGATGAGGTCTTAAGAATGCAGCAAATTACAGGTTTAGCAGATGCGTATAAAGATGAAGATTTTTC TTTTGCTTGGAAATAAAATA
Downstream 100 bases:
>100_bases ATATATTTTTTATTCATGAGTGATATATATGAAATATTTGTATTATTATACTTTCTGTTTCTTTAGCTTCACTTCAAATG CAGAGTATTATATTGGTGGT
Product: phage protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 206; Mature: 206
Protein sequence:
>206_residues MKIIFISTISIAILSTYTIAATTRSDGTISIESIDAPYTKDLALLATRRVVNDVVIHTNERLKIIDTNFIVNAQSISTVG SNLGAAGDAIQANHNALVDLELKNSIYIDEWNNMFKESISKIESQISQNRKVSSRGIAGVAAMTNIPTLTDGSFSVGMGY GYFDGEDALAFGVSKYFNSGVAIKTSFATTGANNTTLGIGASYSFK
Sequences:
>Translated_206_residues MKIIFISTISIAILSTYTIAATTRSDGTISIESIDAPYTKDLALLATRRVVNDVVIHTNERLKIIDTNFIVNAQSISTVG SNLGAAGDAIQANHNALVDLELKNSIYIDEWNNMFKESISKIESQISQNRKVSSRGIAGVAAMTNIPTLTDGSFSVGMGY GYFDGEDALAFGVSKYFNSGVAIKTSFATTGANNTTLGIGASYSFK >Mature_206_residues MKIIFISTISIAILSTYTIAATTRSDGTISIESIDAPYTKDLALLATRRVVNDVVIHTNERLKIIDTNFIVNAQSISTVG SNLGAAGDAIQANHNALVDLELKNSIYIDEWNNMFKESISKIESQISQNRKVSSRGIAGVAAMTNIPTLTDGSFSVGMGY GYFDGEDALAFGVSKYFNSGVAIKTSFATTGANNTTLGIGASYSFK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21983; Mature: 21983
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIIFISTISIAILSTYTIAATTRSDGTISIESIDAPYTKDLALLATRRVVNDVVIHTNE CEEEEEEHHEEEEHEEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHEEEECCC RLKIIDTNFIVNAQSISTVGSNLGAAGDAIQANHNALVDLELKNSIYIDEWNNMFKESIS EEEEEECEEEEECHHHHHHHCCCCCCCCEEECCCCEEEEEEECCCEEEEHHHHHHHHHHH KIESQISQNRKVSSRGIAGVAAMTNIPTLTDGSFSVGMGYGYFDGEDALAFGVSKYFNSG HHHHHHHHCCCCCCCCCEEEEHHCCCCCCCCCCEEEECCCCEECCCCHHHHHHHHHHCCC VAIKTSFATTGANNTTLGIGASYSFK EEEEEEEEECCCCCCEEEECCCCCCC >Mature Secondary Structure MKIIFISTISIAILSTYTIAATTRSDGTISIESIDAPYTKDLALLATRRVVNDVVIHTNE CEEEEEEHHEEEEHEEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHEEEECCC RLKIIDTNFIVNAQSISTVGSNLGAAGDAIQANHNALVDLELKNSIYIDEWNNMFKESIS EEEEEECEEEEECHHHHHHHCCCCCCCCEEECCCCEEEEEEECCCEEEEHHHHHHHHHHH KIESQISQNRKVSSRGIAGVAAMTNIPTLTDGSFSVGMGYGYFDGEDALAFGVSKYFNSG HHHHHHHHCCCCCCCCCEEEEHHCCCCCCCCCCEEEECCCCEECCCCHHHHHHHHHHCCC VAIKTSFATTGANNTTLGIGASYSFK EEEEEEEEECCCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA