Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695389

Identifier: 209695389

GI number: 209695389

Start: 2059548

End: 2060168

Strand: Reverse

Name: 209695389

Synonym: VSAL_I1924

Alternate gene names: NA

Gene position: 2060168-2059548 (Counterclockwise)

Preceding gene: 209695390

Following gene: 209695388

Centisome position: 61.96

GC content: 34.62

Gene sequence:

>621_bases
ATGAAAATAATATTTATATCTACTATTTCTATAGCTATTTTATCTACATATACAATAGCAGCAACTACACGATCAGATGG
AACAATATCAATCGAGAGTATCGATGCTCCATATACGAAGGATCTAGCGCTATTAGCGACTAGAAGAGTAGTAAACGATG
TGGTAATTCATACCAATGAACGTTTAAAGATTATCGACACCAATTTTATAGTAAATGCCCAAAGCATATCAACCGTAGGT
AGTAATTTAGGGGCAGCAGGCGACGCTATTCAGGCAAATCATAATGCTTTAGTTGATTTAGAACTTAAAAATTCAATATA
TATTGATGAATGGAATAATATGTTTAAGGAATCTATTAGCAAAATTGAATCTCAAATCAGTCAAAATAGAAAAGTATCCT
CAAGAGGAATAGCAGGTGTGGCTGCAATGACAAATATCCCTACCCTAACTGATGGTTCATTCTCGGTAGGTATGGGTTAT
GGTTATTTCGATGGCGAAGATGCTTTAGCCTTTGGTGTCTCTAAATATTTCAACTCAGGAGTAGCAATAAAAACTTCTTT
TGCCACTACTGGAGCTAACAATACGACTCTTGGTATTGGTGCTAGCTATAGTTTTAAATAA

Upstream 100 bases:

>100_bases
TTAGGAATGGACCCCGATGAGGTCTTAAGAATGCAGCAAATTACAGGTTTAGCAGATGCGTATAAAGATGAAGATTTTTC
TTTTGCTTGGAAATAAAATA

Downstream 100 bases:

>100_bases
ATATATTTTTTATTCATGAGTGATATATATGAAATATTTGTATTATTATACTTTCTGTTTCTTTAGCTTCACTTCAAATG
CAGAGTATTATATTGGTGGT

Product: phage protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MKIIFISTISIAILSTYTIAATTRSDGTISIESIDAPYTKDLALLATRRVVNDVVIHTNERLKIIDTNFIVNAQSISTVG
SNLGAAGDAIQANHNALVDLELKNSIYIDEWNNMFKESISKIESQISQNRKVSSRGIAGVAAMTNIPTLTDGSFSVGMGY
GYFDGEDALAFGVSKYFNSGVAIKTSFATTGANNTTLGIGASYSFK

Sequences:

>Translated_206_residues
MKIIFISTISIAILSTYTIAATTRSDGTISIESIDAPYTKDLALLATRRVVNDVVIHTNERLKIIDTNFIVNAQSISTVG
SNLGAAGDAIQANHNALVDLELKNSIYIDEWNNMFKESISKIESQISQNRKVSSRGIAGVAAMTNIPTLTDGSFSVGMGY
GYFDGEDALAFGVSKYFNSGVAIKTSFATTGANNTTLGIGASYSFK
>Mature_206_residues
MKIIFISTISIAILSTYTIAATTRSDGTISIESIDAPYTKDLALLATRRVVNDVVIHTNERLKIIDTNFIVNAQSISTVG
SNLGAAGDAIQANHNALVDLELKNSIYIDEWNNMFKESISKIESQISQNRKVSSRGIAGVAAMTNIPTLTDGSFSVGMGY
GYFDGEDALAFGVSKYFNSGVAIKTSFATTGANNTTLGIGASYSFK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21983; Mature: 21983

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIFISTISIAILSTYTIAATTRSDGTISIESIDAPYTKDLALLATRRVVNDVVIHTNE
CEEEEEEHHEEEEHEEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHEEEECCC
RLKIIDTNFIVNAQSISTVGSNLGAAGDAIQANHNALVDLELKNSIYIDEWNNMFKESIS
EEEEEECEEEEECHHHHHHHCCCCCCCCEEECCCCEEEEEEECCCEEEEHHHHHHHHHHH
KIESQISQNRKVSSRGIAGVAAMTNIPTLTDGSFSVGMGYGYFDGEDALAFGVSKYFNSG
HHHHHHHHCCCCCCCCCEEEEHHCCCCCCCCCCEEEECCCCEECCCCHHHHHHHHHHCCC
VAIKTSFATTGANNTTLGIGASYSFK
EEEEEEEEECCCCCCEEEECCCCCCC
>Mature Secondary Structure
MKIIFISTISIAILSTYTIAATTRSDGTISIESIDAPYTKDLALLATRRVVNDVVIHTNE
CEEEEEEHHEEEEHEEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHEEEECCC
RLKIIDTNFIVNAQSISTVGSNLGAAGDAIQANHNALVDLELKNSIYIDEWNNMFKESIS
EEEEEECEEEEECHHHHHHHCCCCCCCCEEECCCCEEEEEEECCCEEEEHHHHHHHHHHH
KIESQISQNRKVSSRGIAGVAAMTNIPTLTDGSFSVGMGYGYFDGEDALAFGVSKYFNSG
HHHHHHHHCCCCCCCCCEEEEHHCCCCCCCCCCEEEECCCCEECCCCHHHHHHHHHHCCC
VAIKTSFATTGANNTTLGIGASYSFK
EEEEEEEEECCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA