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The map label for this gene is ycaD [H]

Identifier: 209695384

GI number: 209695384

Start: 2051215

End: 2052375

Strand: Reverse

Name: ycaD [H]

Synonym: VSAL_I1918

Alternate gene names: 209695384

Gene position: 2052375-2051215 (Counterclockwise)

Preceding gene: 209695386

Following gene: 209695383

Centisome position: 61.72

GC content: 40.31

Gene sequence:

>1161_bases
GTGAACACAACAACATCAACTCAATCACAATCTGGTTTATTCGTTCCAGTGATTGCACTTTCTTTATTTGCTATAGCATC
TGGGTACTTAATGAGTCTTATCCCATTGATGTTAAGTCAATATGGAATGGAGGCGAAATACGCCAGTTGGTTAGCAAGTG
CTTTCTATGCAGGCCTATTAGTTGGCGCAGGGCTAATTGAACCTTTTGTTGCTCGTCTTGGTCACAAAAATGCATTTGTA
TTATTCTTAGCATTACTTGCTGCAACTATCGTGATCTTACCTGTAGCCCCTGTTGAGTGGGTATGGATGACTCTTCGTTT
TGTGGCTGGTATTGCGGTTGCAGGCGTTTTTGTTGTTGTTGAATCTTGGCTGCTTATTGGTGACGCTGAAAGTCGTCCAA
AACGCTTAGGTTTATACATGGGTGCTTTATACGGTGGTTCATCTTTAGGTCAACTGGGTATCGGTTTTATTGGTATTGAA
GGGTTACTTCCTTATTACATGATCATTGGCTTACTTATGATGGCTATTGCATGCTTACTGTTTGGTAAAGGTGCTCAGCC
CCAAGTTCAGCATCATAATGTATTAAACCTAAAACAAATTTTAAAACTAAACAAAGCGTCGATTATGGGCTGTGTTGTTT
CTGGTTTATTACTCGGTGCAGTTTATGGACTGATGCCTCTAGAACTAAAACACCGTAATATTAATATCACTCAAATTGGC
AGCTTAATGGCGTTGATTGTTTTAGGTGGAATGGCAGTTCAACCATTAGTTTCGTACTTATCTCGACACTTAGGGAAAAC
ATTATTGATGGCATTATTCTGCGTGCTGGGCGTTTTTGCTATTGGATTAACTACGCTAAGTGACCATGCTGCCGTTCTAG
CAACCTCATTGGTGCTTCTAGGTATGGCCGCTTTTGCTATTTATCCTATTGCTATCTCTTTGGGTTGTGATCAGTTGGAT
GAGTCTTACATTGTTTCAGCAACACAAGTAATGCTATTTAGCTATAGCATTGGTTCTGTATGTGGCCCTGTATTAGCAAA
TACACTAATGAACACTGCTGAAGGTTTAATGAGCTATTTATTCGCCATTCTACTAGCGACCGCTATTTATATGTTACTAG
CGAGTATGCGCCAACAGCGACCAATGGTTGCTGGTGAATAA

Upstream 100 bases:

>100_bases
AATTTAATCATTACAAGAAAAATTACTCGTTTTACTTGGTCGCTTTTTAGCCTCATAGTCGCGGAAAATCTACTTCCTAT
TCATTATTTGAGGCACTGCG

Downstream 100 bases:

>100_bases
CTTCTAACCGTAACGCCTTTCTTTTCATAAAAACTAGGTTCTTAGGGTTCATAGCGATACAATAGCCCTAAGAATTCTTG
ATGAGTAATGACCAATGGAA

Product: MFS transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MNTTTSTQSQSGLFVPVIALSLFAIASGYLMSLIPLMLSQYGMEAKYASWLASAFYAGLLVGAGLIEPFVARLGHKNAFV
LFLALLAATIVILPVAPVEWVWMTLRFVAGIAVAGVFVVVESWLLIGDAESRPKRLGLYMGALYGGSSLGQLGIGFIGIE
GLLPYYMIIGLLMMAIACLLFGKGAQPQVQHHNVLNLKQILKLNKASIMGCVVSGLLLGAVYGLMPLELKHRNINITQIG
SLMALIVLGGMAVQPLVSYLSRHLGKTLLMALFCVLGVFAIGLTTLSDHAAVLATSLVLLGMAAFAIYPIAISLGCDQLD
ESYIVSATQVMLFSYSIGSVCGPVLANTLMNTAEGLMSYLFAILLATAIYMLLASMRQQRPMVAGE

Sequences:

>Translated_386_residues
MNTTTSTQSQSGLFVPVIALSLFAIASGYLMSLIPLMLSQYGMEAKYASWLASAFYAGLLVGAGLIEPFVARLGHKNAFV
LFLALLAATIVILPVAPVEWVWMTLRFVAGIAVAGVFVVVESWLLIGDAESRPKRLGLYMGALYGGSSLGQLGIGFIGIE
GLLPYYMIIGLLMMAIACLLFGKGAQPQVQHHNVLNLKQILKLNKASIMGCVVSGLLLGAVYGLMPLELKHRNINITQIG
SLMALIVLGGMAVQPLVSYLSRHLGKTLLMALFCVLGVFAIGLTTLSDHAAVLATSLVLLGMAAFAIYPIAISLGCDQLD
ESYIVSATQVMLFSYSIGSVCGPVLANTLMNTAEGLMSYLFAILLATAIYMLLASMRQQRPMVAGE
>Mature_386_residues
MNTTTSTQSQSGLFVPVIALSLFAIASGYLMSLIPLMLSQYGMEAKYASWLASAFYAGLLVGAGLIEPFVARLGHKNAFV
LFLALLAATIVILPVAPVEWVWMTLRFVAGIAVAGVFVVVESWLLIGDAESRPKRLGLYMGALYGGSSLGQLGIGFIGIE
GLLPYYMIIGLLMMAIACLLFGKGAQPQVQHHNVLNLKQILKLNKASIMGCVVSGLLLGAVYGLMPLELKHRNINITQIG
SLMALIVLGGMAVQPLVSYLSRHLGKTLLMALFCVLGVFAIGLTTLSDHAAVLATSLVLLGMAAFAIYPIAISLGCDQLD
ESYIVSATQVMLFSYSIGSVCGPVLANTLMNTAEGLMSYLFAILLATAIYMLLASMRQQRPMVAGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=356, Percent_Identity=32.3033707865169, Blast_Score=163, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41036; Mature: 41036

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTTSTQSQSGLFVPVIALSLFAIASGYLMSLIPLMLSQYGMEAKYASWLASAFYAGLL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VGAGLIEPFVARLGHKNAFVLFLALLAATIVILPVAPVEWVWMTLRFVAGIAVAGVFVVV
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
ESWLLIGDAESRPKRLGLYMGALYGGSSLGQLGIGFIGIEGLLPYYMIIGLLMMAIACLL
HHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGKGAQPQVQHHNVLNLKQILKLNKASIMGCVVSGLLLGAVYGLMPLELKHRNINITQIG
HCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHH
SLMALIVLGGMAVQPLVSYLSRHLGKTLLMALFCVLGVFAIGLTTLSDHAAVLATSLVLL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMAAFAIYPIAISLGCDQLDESYIVSATQVMLFSYSIGSVCGPVLANTLMNTAEGLMSYL
HHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAILLATAIYMLLASMRQQRPMVAGE
HHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNTTTSTQSQSGLFVPVIALSLFAIASGYLMSLIPLMLSQYGMEAKYASWLASAFYAGLL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VGAGLIEPFVARLGHKNAFVLFLALLAATIVILPVAPVEWVWMTLRFVAGIAVAGVFVVV
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
ESWLLIGDAESRPKRLGLYMGALYGGSSLGQLGIGFIGIEGLLPYYMIIGLLMMAIACLL
HHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGKGAQPQVQHHNVLNLKQILKLNKASIMGCVVSGLLLGAVYGLMPLELKHRNINITQIG
HCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHH
SLMALIVLGGMAVQPLVSYLSRHLGKTLLMALFCVLGVFAIGLTTLSDHAAVLATSLVLL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMAAFAIYPIAISLGCDQLDESYIVSATQVMLFSYSIGSVCGPVLANTLMNTAEGLMSYL
HHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAILLATAIYMLLASMRQQRPMVAGE
HHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA