The gene/protein map for NC_011312 is currently unavailable.
Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

Click here to switch to the map view.

The map label for this gene is 209695262

Identifier: 209695262

GI number: 209695262

Start: 1902035

End: 1903423

Strand: Reverse

Name: 209695262

Synonym: VSAL_I1785

Alternate gene names: NA

Gene position: 1903423-1902035 (Counterclockwise)

Preceding gene: 209695263

Following gene: 209695261

Centisome position: 57.24

GC content: 43.2

Gene sequence:

>1389_bases
ATGAAATCTTCAGTCGCTGGAACGCTTCTTCTGCTTATCGTTACTTCTTTTTCTGTGCATTCTTCTGATGTTGCTTCTGG
AGGAAAAACCAGTGTGCGAAAAGAAGGGGCAAATGCGTTTTCTTTACCTGCCGCCAATCTTCCAATGAGTAAGCGTTTAG
ATTTTAGTGTGGGCAACAGTTTTTTTCGTAACCCTTGGGTGCAAGCTCCTGCATCTACGGATGCTAGAGATGGATTAGGT
CCATTATTCAATACCAACGGTTGTCAAAATTGCCATATTAAAGATGGTCGAGGTCATGCACCAAGAGAAGGGGATACTAA
TGCCGTTTCAATGCTGGTGCGTTTAAGTATTCCGGCATTAACACCGGAGCAGAAAAAACGCGTAATTATTGAGGGTGTTA
TTCCTGAACCTATCTATGGCGGACAGTTACAAGATTTTTCGTTGTCTGGTGCAAAGCCTGAGGGCCAGATACACATTACT
TACAGTGAAAAGAAAGTGCAGCTGTCTGATGGTGACGTTGTCACTCTTCGTAAACCGAACTTATCCATTAAAGAGTTAGC
TTATGGGGAGATGGATAAAAATGTGCTGATGTCTGCACGGGTTGCACCACCCATGATTGGCTTAGGATTATTAGAGTCAA
TTCCTGAATCAACGATTCTAGAGTTTGCAAAAAAACAACAGGAGGACAATAACGGCATCTCAGGGAAAGCGAATCGTGTA
TGGGATGCAAAAAACGAAGCATTGGTTTTAGGTCGATTTGGCTGGAAAGCGGGCCAACCGAGTTTAATGCAACAAAATGC
GGCGGCATTTAATGGTGATCTTGGATTAACCAGTAATTTATTCCCGAAAGATGATTGCACTCAAGCTCAAACTATTTGTG
AAAAGCTACCCCATGGTGGTACGCCAGAAGTGAGTGATAAGATCCTAAACTTTGTTGAATTTTATTCACAGCACCTTGCT
GTTCCTATTCGTCGTAATGTAAAGGATCATCAAGTGATCGTCGGTCAAAGAATCTTTAAAGACATTGGCTGTGAAAGTTG
CCATCAATCGAATATTAAAACCGCCAATATTACGAACAGACCTGCATTGTCGAATCAAACCATTCATCCTTACACTGACA
TGTTGTTGCATGATATGGGGGAAGGGCTAGCCGATAATCGTCCCGAATTTTTAGCGGATGGACAGGAGTGGAGAACGCCA
CCGTTATGGGGGTTAGGTTACTTACAAGAAGTGAATGGACATACAGAGATGTTGCATGATGGGCGTGCTAGAAACGCCCT
TGAAGCCATTCTATGGCACGGTGGTGAAGCGCAACAAAGCCGTGATGATGTCGTCAAACTATCAACCCAAGATCGTAACG
CATTACTCGCGTTTTTAGAGTCACTGTAA

Upstream 100 bases:

>100_bases
CCTAGGCTCAATCACTTTTTTTCCCCGAGAAAGTGATTGAGCCGTTTTTCGTTTAACCATTGGTTAATTATTACTAATGA
ATATCAGGATGTTAGATATC

Downstream 100 bases:

>100_bases
GGTATTAGCGATGAAACCTCTTTATTTATTATTTGTCTCCGTGGCTTTTTTAACCGCTTGCCAGAGTACAAGTAAAACGA
GTGAGCAACCAGATTCCATT

Product: hypothetical protein

Products: NA

Alternate protein names: Lipoprotein; Thiol Oxidoreductase-Like; Thiol Oxidoreductase-Like Protein; Exported Protein; Signal Peptide

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MKSSVAGTLLLLIVTSFSVHSSDVASGGKTSVRKEGANAFSLPAANLPMSKRLDFSVGNSFFRNPWVQAPASTDARDGLG
PLFNTNGCQNCHIKDGRGHAPREGDTNAVSMLVRLSIPALTPEQKKRVIIEGVIPEPIYGGQLQDFSLSGAKPEGQIHIT
YSEKKVQLSDGDVVTLRKPNLSIKELAYGEMDKNVLMSARVAPPMIGLGLLESIPESTILEFAKKQQEDNNGISGKANRV
WDAKNEALVLGRFGWKAGQPSLMQQNAAAFNGDLGLTSNLFPKDDCTQAQTICEKLPHGGTPEVSDKILNFVEFYSQHLA
VPIRRNVKDHQVIVGQRIFKDIGCESCHQSNIKTANITNRPALSNQTIHPYTDMLLHDMGEGLADNRPEFLADGQEWRTP
PLWGLGYLQEVNGHTEMLHDGRARNALEAILWHGGEAQQSRDDVVKLSTQDRNALLAFLESL

Sequences:

>Translated_462_residues
MKSSVAGTLLLLIVTSFSVHSSDVASGGKTSVRKEGANAFSLPAANLPMSKRLDFSVGNSFFRNPWVQAPASTDARDGLG
PLFNTNGCQNCHIKDGRGHAPREGDTNAVSMLVRLSIPALTPEQKKRVIIEGVIPEPIYGGQLQDFSLSGAKPEGQIHIT
YSEKKVQLSDGDVVTLRKPNLSIKELAYGEMDKNVLMSARVAPPMIGLGLLESIPESTILEFAKKQQEDNNGISGKANRV
WDAKNEALVLGRFGWKAGQPSLMQQNAAAFNGDLGLTSNLFPKDDCTQAQTICEKLPHGGTPEVSDKILNFVEFYSQHLA
VPIRRNVKDHQVIVGQRIFKDIGCESCHQSNIKTANITNRPALSNQTIHPYTDMLLHDMGEGLADNRPEFLADGQEWRTP
PLWGLGYLQEVNGHTEMLHDGRARNALEAILWHGGEAQQSRDDVVKLSTQDRNALLAFLESL
>Mature_462_residues
MKSSVAGTLLLLIVTSFSVHSSDVASGGKTSVRKEGANAFSLPAANLPMSKRLDFSVGNSFFRNPWVQAPASTDARDGLG
PLFNTNGCQNCHIKDGRGHAPREGDTNAVSMLVRLSIPALTPEQKKRVIIEGVIPEPIYGGQLQDFSLSGAKPEGQIHIT
YSEKKVQLSDGDVVTLRKPNLSIKELAYGEMDKNVLMSARVAPPMIGLGLLESIPESTILEFAKKQQEDNNGISGKANRV
WDAKNEALVLGRFGWKAGQPSLMQQNAAAFNGDLGLTSNLFPKDDCTQAQTICEKLPHGGTPEVSDKILNFVEFYSQHLA
VPIRRNVKDHQVIVGQRIFKDIGCESCHQSNIKTANITNRPALSNQTIHPYTDMLLHDMGEGLADNRPEFLADGQEWRTP
PLWGLGYLQEVNGHTEMLHDGRARNALEAILWHGGEAQQSRDDVVKLSTQDRNALLAFLESL

Specific function: Unknown

COG id: COG3488

COG function: function code C; Predicted thiol oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50506; Mature: 50506

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS51007 CYTC L=RR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSSVAGTLLLLIVTSFSVHSSDVASGGKTSVRKEGANAFSLPAANLPMSKRLDFSVGNS
CCCHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHCCCCEEECCCCCCCHHHCCCHHHCCH
FFRNPWVQAPASTDARDGLGPLFNTNGCQNCHIKDGRGHAPREGDTNAVSMLVRLSIPAL
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC
TPEQKKRVIIEGVIPEPIYGGQLQDFSLSGAKPEGQIHITYSEKKVQLSDGDVVTLRKPN
CCHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCEEEEECCC
LSIKELAYGEMDKNVLMSARVAPPMIGLGLLESIPESTILEFAKKQQEDNNGISGKANRV
CCHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCE
WDAKNEALVLGRFGWKAGQPSLMQQNAAAFNGDLGLTSNLFPKDDCTQAQTICEKLPHGG
ECCCCCEEEEEECCCCCCCCHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
TPEVSDKILNFVEFYSQHLAVPIRRNVKDHQVIVGQRIFKDIGCESCHQSNIKTANITNR
CCHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCC
PALSNQTIHPYTDMLLHDMGEGLADNRPEFLADGQEWRTPPLWGLGYLQEVNGHTEMLHD
CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCHHCCCCCCCCCHHHHHCCCHHHHHHC
GRARNALEAILWHGGEAQQSRDDVVKLSTQDRNALLAFLESL
CHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHC
>Mature Secondary Structure
MKSSVAGTLLLLIVTSFSVHSSDVASGGKTSVRKEGANAFSLPAANLPMSKRLDFSVGNS
CCCHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHCCCCEEECCCCCCCHHHCCCHHHCCH
FFRNPWVQAPASTDARDGLGPLFNTNGCQNCHIKDGRGHAPREGDTNAVSMLVRLSIPAL
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC
TPEQKKRVIIEGVIPEPIYGGQLQDFSLSGAKPEGQIHITYSEKKVQLSDGDVVTLRKPN
CCHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCEEEEECCC
LSIKELAYGEMDKNVLMSARVAPPMIGLGLLESIPESTILEFAKKQQEDNNGISGKANRV
CCHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCE
WDAKNEALVLGRFGWKAGQPSLMQQNAAAFNGDLGLTSNLFPKDDCTQAQTICEKLPHGG
ECCCCCEEEEEECCCCCCCCHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
TPEVSDKILNFVEFYSQHLAVPIRRNVKDHQVIVGQRIFKDIGCESCHQSNIKTANITNR
CCHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCC
PALSNQTIHPYTDMLLHDMGEGLADNRPEFLADGQEWRTPPLWGLGYLQEVNGHTEMLHD
CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCHHCCCCCCCCCHHHHHCCCHHHHHHC
GRARNALEAILWHGGEAQQSRDDVVKLSTQDRNALLAFLESL
CHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA