| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695262
Identifier: 209695262
GI number: 209695262
Start: 1902035
End: 1903423
Strand: Reverse
Name: 209695262
Synonym: VSAL_I1785
Alternate gene names: NA
Gene position: 1903423-1902035 (Counterclockwise)
Preceding gene: 209695263
Following gene: 209695261
Centisome position: 57.24
GC content: 43.2
Gene sequence:
>1389_bases ATGAAATCTTCAGTCGCTGGAACGCTTCTTCTGCTTATCGTTACTTCTTTTTCTGTGCATTCTTCTGATGTTGCTTCTGG AGGAAAAACCAGTGTGCGAAAAGAAGGGGCAAATGCGTTTTCTTTACCTGCCGCCAATCTTCCAATGAGTAAGCGTTTAG ATTTTAGTGTGGGCAACAGTTTTTTTCGTAACCCTTGGGTGCAAGCTCCTGCATCTACGGATGCTAGAGATGGATTAGGT CCATTATTCAATACCAACGGTTGTCAAAATTGCCATATTAAAGATGGTCGAGGTCATGCACCAAGAGAAGGGGATACTAA TGCCGTTTCAATGCTGGTGCGTTTAAGTATTCCGGCATTAACACCGGAGCAGAAAAAACGCGTAATTATTGAGGGTGTTA TTCCTGAACCTATCTATGGCGGACAGTTACAAGATTTTTCGTTGTCTGGTGCAAAGCCTGAGGGCCAGATACACATTACT TACAGTGAAAAGAAAGTGCAGCTGTCTGATGGTGACGTTGTCACTCTTCGTAAACCGAACTTATCCATTAAAGAGTTAGC TTATGGGGAGATGGATAAAAATGTGCTGATGTCTGCACGGGTTGCACCACCCATGATTGGCTTAGGATTATTAGAGTCAA TTCCTGAATCAACGATTCTAGAGTTTGCAAAAAAACAACAGGAGGACAATAACGGCATCTCAGGGAAAGCGAATCGTGTA TGGGATGCAAAAAACGAAGCATTGGTTTTAGGTCGATTTGGCTGGAAAGCGGGCCAACCGAGTTTAATGCAACAAAATGC GGCGGCATTTAATGGTGATCTTGGATTAACCAGTAATTTATTCCCGAAAGATGATTGCACTCAAGCTCAAACTATTTGTG AAAAGCTACCCCATGGTGGTACGCCAGAAGTGAGTGATAAGATCCTAAACTTTGTTGAATTTTATTCACAGCACCTTGCT GTTCCTATTCGTCGTAATGTAAAGGATCATCAAGTGATCGTCGGTCAAAGAATCTTTAAAGACATTGGCTGTGAAAGTTG CCATCAATCGAATATTAAAACCGCCAATATTACGAACAGACCTGCATTGTCGAATCAAACCATTCATCCTTACACTGACA TGTTGTTGCATGATATGGGGGAAGGGCTAGCCGATAATCGTCCCGAATTTTTAGCGGATGGACAGGAGTGGAGAACGCCA CCGTTATGGGGGTTAGGTTACTTACAAGAAGTGAATGGACATACAGAGATGTTGCATGATGGGCGTGCTAGAAACGCCCT TGAAGCCATTCTATGGCACGGTGGTGAAGCGCAACAAAGCCGTGATGATGTCGTCAAACTATCAACCCAAGATCGTAACG CATTACTCGCGTTTTTAGAGTCACTGTAA
Upstream 100 bases:
>100_bases CCTAGGCTCAATCACTTTTTTTCCCCGAGAAAGTGATTGAGCCGTTTTTCGTTTAACCATTGGTTAATTATTACTAATGA ATATCAGGATGTTAGATATC
Downstream 100 bases:
>100_bases GGTATTAGCGATGAAACCTCTTTATTTATTATTTGTCTCCGTGGCTTTTTTAACCGCTTGCCAGAGTACAAGTAAAACGA GTGAGCAACCAGATTCCATT
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein; Thiol Oxidoreductase-Like; Thiol Oxidoreductase-Like Protein; Exported Protein; Signal Peptide
Number of amino acids: Translated: 462; Mature: 462
Protein sequence:
>462_residues MKSSVAGTLLLLIVTSFSVHSSDVASGGKTSVRKEGANAFSLPAANLPMSKRLDFSVGNSFFRNPWVQAPASTDARDGLG PLFNTNGCQNCHIKDGRGHAPREGDTNAVSMLVRLSIPALTPEQKKRVIIEGVIPEPIYGGQLQDFSLSGAKPEGQIHIT YSEKKVQLSDGDVVTLRKPNLSIKELAYGEMDKNVLMSARVAPPMIGLGLLESIPESTILEFAKKQQEDNNGISGKANRV WDAKNEALVLGRFGWKAGQPSLMQQNAAAFNGDLGLTSNLFPKDDCTQAQTICEKLPHGGTPEVSDKILNFVEFYSQHLA VPIRRNVKDHQVIVGQRIFKDIGCESCHQSNIKTANITNRPALSNQTIHPYTDMLLHDMGEGLADNRPEFLADGQEWRTP PLWGLGYLQEVNGHTEMLHDGRARNALEAILWHGGEAQQSRDDVVKLSTQDRNALLAFLESL
Sequences:
>Translated_462_residues MKSSVAGTLLLLIVTSFSVHSSDVASGGKTSVRKEGANAFSLPAANLPMSKRLDFSVGNSFFRNPWVQAPASTDARDGLG PLFNTNGCQNCHIKDGRGHAPREGDTNAVSMLVRLSIPALTPEQKKRVIIEGVIPEPIYGGQLQDFSLSGAKPEGQIHIT YSEKKVQLSDGDVVTLRKPNLSIKELAYGEMDKNVLMSARVAPPMIGLGLLESIPESTILEFAKKQQEDNNGISGKANRV WDAKNEALVLGRFGWKAGQPSLMQQNAAAFNGDLGLTSNLFPKDDCTQAQTICEKLPHGGTPEVSDKILNFVEFYSQHLA VPIRRNVKDHQVIVGQRIFKDIGCESCHQSNIKTANITNRPALSNQTIHPYTDMLLHDMGEGLADNRPEFLADGQEWRTP PLWGLGYLQEVNGHTEMLHDGRARNALEAILWHGGEAQQSRDDVVKLSTQDRNALLAFLESL >Mature_462_residues MKSSVAGTLLLLIVTSFSVHSSDVASGGKTSVRKEGANAFSLPAANLPMSKRLDFSVGNSFFRNPWVQAPASTDARDGLG PLFNTNGCQNCHIKDGRGHAPREGDTNAVSMLVRLSIPALTPEQKKRVIIEGVIPEPIYGGQLQDFSLSGAKPEGQIHIT YSEKKVQLSDGDVVTLRKPNLSIKELAYGEMDKNVLMSARVAPPMIGLGLLESIPESTILEFAKKQQEDNNGISGKANRV WDAKNEALVLGRFGWKAGQPSLMQQNAAAFNGDLGLTSNLFPKDDCTQAQTICEKLPHGGTPEVSDKILNFVEFYSQHLA VPIRRNVKDHQVIVGQRIFKDIGCESCHQSNIKTANITNRPALSNQTIHPYTDMLLHDMGEGLADNRPEFLADGQEWRTP PLWGLGYLQEVNGHTEMLHDGRARNALEAILWHGGEAQQSRDDVVKLSTQDRNALLAFLESL
Specific function: Unknown
COG id: COG3488
COG function: function code C; Predicted thiol oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50506; Mature: 50506
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: PS51007 CYTC L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSSVAGTLLLLIVTSFSVHSSDVASGGKTSVRKEGANAFSLPAANLPMSKRLDFSVGNS CCCHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHCCCCEEECCCCCCCHHHCCCHHHCCH FFRNPWVQAPASTDARDGLGPLFNTNGCQNCHIKDGRGHAPREGDTNAVSMLVRLSIPAL HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC TPEQKKRVIIEGVIPEPIYGGQLQDFSLSGAKPEGQIHITYSEKKVQLSDGDVVTLRKPN CCHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCEEEEECCC LSIKELAYGEMDKNVLMSARVAPPMIGLGLLESIPESTILEFAKKQQEDNNGISGKANRV CCHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCE WDAKNEALVLGRFGWKAGQPSLMQQNAAAFNGDLGLTSNLFPKDDCTQAQTICEKLPHGG ECCCCCEEEEEECCCCCCCCHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC TPEVSDKILNFVEFYSQHLAVPIRRNVKDHQVIVGQRIFKDIGCESCHQSNIKTANITNR CCHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCC PALSNQTIHPYTDMLLHDMGEGLADNRPEFLADGQEWRTPPLWGLGYLQEVNGHTEMLHD CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCHHCCCCCCCCCHHHHHCCCHHHHHHC GRARNALEAILWHGGEAQQSRDDVVKLSTQDRNALLAFLESL CHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHC >Mature Secondary Structure MKSSVAGTLLLLIVTSFSVHSSDVASGGKTSVRKEGANAFSLPAANLPMSKRLDFSVGNS CCCHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHCCCCEEECCCCCCCHHHCCCHHHCCH FFRNPWVQAPASTDARDGLGPLFNTNGCQNCHIKDGRGHAPREGDTNAVSMLVRLSIPAL HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC TPEQKKRVIIEGVIPEPIYGGQLQDFSLSGAKPEGQIHITYSEKKVQLSDGDVVTLRKPN CCHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCEEEEECCC LSIKELAYGEMDKNVLMSARVAPPMIGLGLLESIPESTILEFAKKQQEDNNGISGKANRV CCHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCE WDAKNEALVLGRFGWKAGQPSLMQQNAAAFNGDLGLTSNLFPKDDCTQAQTICEKLPHGG ECCCCCEEEEEECCCCCCCCHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC TPEVSDKILNFVEFYSQHLAVPIRRNVKDHQVIVGQRIFKDIGCESCHQSNIKTANITNR CCHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCC PALSNQTIHPYTDMLLHDMGEGLADNRPEFLADGQEWRTPPLWGLGYLQEVNGHTEMLHD CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCHHCCCCCCCCCHHHHHCCCHHHHHHC GRARNALEAILWHGGEAQQSRDDVVKLSTQDRNALLAFLESL CHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA