| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209695258
Identifier: 209695258
GI number: 209695258
Start: 1898601
End: 1898987
Strand: Reverse
Name: 209695258
Synonym: VSAL_I1781
Alternate gene names: NA
Gene position: 1898987-1898601 (Counterclockwise)
Preceding gene: 209695259
Following gene: 209695255
Centisome position: 57.11
GC content: 41.34
Gene sequence:
>387_bases ATGAAAATTGCTCACAAACGTAAAGTACAGTCAAAGCTGCATAAACGTATTAAAGCAACTACACCAAAAACTGAAGTGAA AAAAGCGGTTAAACCTGCAAAAGTAGCTAAACCAGTTGAGAAAAAAGTGGAAGCAGTAGTTGTTGCAGCACCTACAGTGG CAGCAGTAGCGACGGACATCGCTCTAACGCCAAAGCAAAAGGCTGTATTTGATATTGTTTGCCAGAATCCTGAAGGTATC AATTCAAAAGAGATTGGCGTAGCTGCTGGTCAAGAAGAAGCAAAAGCGGCAGCATGGGCGACAGGTGGCTTGAAAAAGCT AGTTGAAGAAAACCTTGTTGTACGTGAACAACTTGCTGGTAATAAAGTAATTTACAAAGCAGCGTAA
Upstream 100 bases:
>100_bases ACTATTTGAGTTTCATTTTAGGGATTGACATCTTTTTTCCGCTATCGTTTTCGAGCTTTATTGCTTTAAAATAGATATAG CGCAACGGAGTTTAAGTTTC
Downstream 100 bases:
>100_bases TGTTTTAGTAAGTCGCTTTAAGACACAAAAAAGCCGAGATTGCCTCGGCTTTTTTGTGTCTGTAACTTTGTGTTTGGTAA GCGTGCGGGGAACTACACCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 128; Mature: 128
Protein sequence:
>128_residues MKIAHKRKVQSKLHKRIKATTPKTEVKKAVKPAKVAKPVEKKVEAVVVAAPTVAAVATDIALTPKQKAVFDIVCQNPEGI NSKEIGVAAGQEEAKAAAWATGGLKKLVEENLVVREQLAGNKVIYKAA
Sequences:
>Translated_128_residues MKIAHKRKVQSKLHKRIKATTPKTEVKKAVKPAKVAKPVEKKVEAVVVAAPTVAAVATDIALTPKQKAVFDIVCQNPEGI NSKEIGVAAGQEEAKAAAWATGGLKKLVEENLVVREQLAGNKVIYKAA >Mature_128_residues MKIAHKRKVQSKLHKRIKATTPKTEVKKAVKPAKVAKPVEKKVEAVVVAAPTVAAVATDIALTPKQKAVFDIVCQNPEGI NSKEIGVAAGQEEAKAAAWATGGLKKLVEENLVVREQLAGNKVIYKAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13627; Mature: 13627
Theoretical pI: Translated: 10.73; Mature: 10.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIAHKRKVQSKLHKRIKATTPKTEVKKAVKPAKVAKPVEKKVEAVVVAAPTVAAVATDI CCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHEEEEECCHHHHHHHHH ALTPKQKAVFDIVCQNPEGINSKEIGVAAGQEEAKAAAWATGGLKKLVEENLVVREQLAG CCCCCCHHHEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NKVIYKAA CEEEEECC >Mature Secondary Structure MKIAHKRKVQSKLHKRIKATTPKTEVKKAVKPAKVAKPVEKKVEAVVVAAPTVAAVATDI CCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHEEEEECCHHHHHHHHH ALTPKQKAVFDIVCQNPEGINSKEIGVAAGQEEAKAAAWATGGLKKLVEENLVVREQLAG CCCCCCHHHEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NKVIYKAA CEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA