| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is astE [H]
Identifier: 209695215
GI number: 209695215
Start: 1841899
End: 1842912
Strand: Reverse
Name: astE [H]
Synonym: VSAL_I1730
Alternate gene names: 209695215
Gene position: 1842912-1841899 (Counterclockwise)
Preceding gene: 209695216
Following gene: 209695214
Centisome position: 55.42
GC content: 36.39
Gene sequence:
>1014_bases ATGGAATATACGTCATTTATTAAAGATACTTTAGATCTTACTAAATCAATATCTTCACGTTCATGGGAATTAGCGAACGG AACGGTGGTGATTCAGCACATCAGGGGTGTCGTTGAAGTTGTGCCACCTAAATGTTCAAATAGAGCCATTATCCTTTCTT CTGGTATTCATGGTAATGAAACCTCACCTATCGAAATTCTAGACTCCATCCTTATTGATATTCAATCCGGAAAACTGTGT TTAAATGACTCATGTTTATTTATTTATGGTCACCCTCAAGCGACCTTAGAAGAGCAGCGTTTTTTAGACACCAATTTAAA TCGTTTATTTACTGGCTATCATAATGATAATTCAGAAATTAAAGAGGTCGCATTAGCGAATTCTCTGATGAATCAAGTTG ATACTTTTTATCAGAAGCATAATGCAGACGACATGTGGCATTTAGATTTACACTGTGCAATTCGTCGTTCAATGCATTAT ACCTTCGCGATACATCCTTTTAATCGTCATTATCAACGTTCTGATAAATTACTTTCTTTTCTAAATGACAGTCAGATTGA AGCGTGTTTATTCTCTGAAGCACCGGCATCCACTTTCAGTTGGTACAGTGCTGAATATCATGGAGCGCATGCGGCCACCA TCGAATTAGGAAAAGTAGCGAAACTGGGTGAGAATGATTTTGAACCGTTGGCTGATTTCATTCATGGATTAAGAGGGTTT ATTAGTACTTCTGAAACAGTGACTAATGAATTGAATGTTGATATGGACAAACACAGTTCATCGTTAATTGAGTATGAAGT AACTCGAAGCATCATAAAGAAAAGTAATGACTTTGAATTTCACTTCCCTGCGGATTTAGCTAATTTTACGTTGTTTAATG AAGGGCAGTTACTTTCTTCTGATGGGAGTCAAAAATGTTATGCTAGCGGTGGTGGCGAAAATGTTGTTTTCCCTAATTCT AATGTTGAAATTGGGCATCGAGCTTGTCTATTAGTCCAAAAAATAGATAATTAA
Upstream 100 bases:
>100_bases AAAGGGTAAACTCACATTCTGGAATAGATATTGTTAATTTTATGTTTCATTAATGGTACTGTTTCTTGGTTGAATATTTT ACCAAGGAAGAGTAATTCAG
Downstream 100 bases:
>100_bases TATGATGTAAATAATGCAGTAAATAACGAAAAAAAGAGAGCTGAAGATATTGAGTACTTAATGGGTACTATTGGCTTTAT ATAATAAAACGCGAATAAAG
Product: succinylglutamate desuccinylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MEYTSFIKDTLDLTKSISSRSWELANGTVVIQHIRGVVEVVPPKCSNRAIILSSGIHGNETSPIEILDSILIDIQSGKLC LNDSCLFIYGHPQATLEEQRFLDTNLNRLFTGYHNDNSEIKEVALANSLMNQVDTFYQKHNADDMWHLDLHCAIRRSMHY TFAIHPFNRHYQRSDKLLSFLNDSQIEACLFSEAPASTFSWYSAEYHGAHAATIELGKVAKLGENDFEPLADFIHGLRGF ISTSETVTNELNVDMDKHSSSLIEYEVTRSIIKKSNDFEFHFPADLANFTLFNEGQLLSSDGSQKCYASGGGENVVFPNS NVEIGHRACLLVQKIDN
Sequences:
>Translated_337_residues MEYTSFIKDTLDLTKSISSRSWELANGTVVIQHIRGVVEVVPPKCSNRAIILSSGIHGNETSPIEILDSILIDIQSGKLC LNDSCLFIYGHPQATLEEQRFLDTNLNRLFTGYHNDNSEIKEVALANSLMNQVDTFYQKHNADDMWHLDLHCAIRRSMHY TFAIHPFNRHYQRSDKLLSFLNDSQIEACLFSEAPASTFSWYSAEYHGAHAATIELGKVAKLGENDFEPLADFIHGLRGF ISTSETVTNELNVDMDKHSSSLIEYEVTRSIIKKSNDFEFHFPADLANFTLFNEGQLLSSDGSQKCYASGGGENVVFPNS NVEIGHRACLLVQKIDN >Mature_337_residues MEYTSFIKDTLDLTKSISSRSWELANGTVVIQHIRGVVEVVPPKCSNRAIILSSGIHGNETSPIEILDSILIDIQSGKLC LNDSCLFIYGHPQATLEEQRFLDTNLNRLFTGYHNDNSEIKEVALANSLMNQVDTFYQKHNADDMWHLDLHCAIRRSMHY TFAIHPFNRHYQRSDKLLSFLNDSQIEACLFSEAPASTFSWYSAEYHGAHAATIELGKVAKLGENDFEPLADFIHGLRGF ISTSETVTNELNVDMDKHSSSLIEYEVTRSIIKKSNDFEFHFPADLANFTLFNEGQLLSSDGSQKCYASGGGENVVFPNS NVEIGHRACLLVQKIDN
Specific function: Transforms N(2)-succinylglutamate into succinate and glutamate [H]
COG id: COG2988
COG function: function code E; Succinylglutamate desuccinylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788040, Length=301, Percent_Identity=35.2159468438538, Blast_Score=190, Evalue=1e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007036 - InterPro: IPR016681 [H]
Pfam domain/function: PF04952 AstE_AspA [H]
EC number: =3.5.1.96 [H]
Molecular weight: Translated: 37889; Mature: 37889
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEYTSFIKDTLDLTKSISSRSWELANGTVVIQHIRGVVEVVPPKCSNRAIILSSGIHGNE CCHHHHHHHHHHHHHHHCCCCEECCCCEEEEHHHHHHHHCCCCCCCCCEEEEECCCCCCC TSPIEILDSILIDIQSGKLCLNDSCLFIYGHPQATLEEQRFLDTNLNRLFTGYHNDNSEI CCHHHHHHHHHEEECCCCEEECCCEEEEEECCCCCHHHHHHHHCCHHHEEECCCCCCHHH KEVALANSLMNQVDTFYQKHNADDMWHLDLHCAIRRSMHYTFAIHPFNRHYQRSDKLLSF HHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHH LNDSQIEACLFSEAPASTFSWYSAEYHGAHAATIELGKVAKLGENDFEPLADFIHGLRGF HCCCCHHEEEECCCCCCHHEEECCCCCCCEEEEEECCHHHHCCCCCHHHHHHHHHHHHHH ISTSETVTNELNVDMDKHSSSLIEYEVTRSIIKKSNDFEFHFPADLANFTLFNEGQLLSS HCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCHHCEEEECCCCEECC DGSQKCYASGGGENVVFPNSNVEIGHRACLLVQKIDN CCCCEEEECCCCCEEEECCCCCCCCCCEEEEEEECCC >Mature Secondary Structure MEYTSFIKDTLDLTKSISSRSWELANGTVVIQHIRGVVEVVPPKCSNRAIILSSGIHGNE CCHHHHHHHHHHHHHHHCCCCEECCCCEEEEHHHHHHHHCCCCCCCCCEEEEECCCCCCC TSPIEILDSILIDIQSGKLCLNDSCLFIYGHPQATLEEQRFLDTNLNRLFTGYHNDNSEI CCHHHHHHHHHEEECCCCEEECCCEEEEEECCCCCHHHHHHHHCCHHHEEECCCCCCHHH KEVALANSLMNQVDTFYQKHNADDMWHLDLHCAIRRSMHYTFAIHPFNRHYQRSDKLLSF HHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHH LNDSQIEACLFSEAPASTFSWYSAEYHGAHAATIELGKVAKLGENDFEPLADFIHGLRGF HCCCCHHEEEECCCCCCHHEEECCCCCCCEEEEEECCHHHHCCCCCHHHHHHHHHHHHHH ISTSETVTNELNVDMDKHSSSLIEYEVTRSIIKKSNDFEFHFPADLANFTLFNEGQLLSS HCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCHHCEEEECCCCEECC DGSQKCYASGGGENVVFPNSNVEIGHRACLLVQKIDN CCCCEEEECCCCCEEEECCCCCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA