| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695149
Identifier: 209695149
GI number: 209695149
Start: 1750329
End: 1750532
Strand: Reverse
Name: 209695149
Synonym: VSAL_I1650
Alternate gene names: NA
Gene position: 1750532-1750329 (Counterclockwise)
Preceding gene: 209695150
Following gene: 209695148
Centisome position: 52.64
GC content: 45.59
Gene sequence:
>204_bases TTGGCAGTTTCGCTTCGCTCAAGTATAGCCAAGCGTCGCTCACACCTTAATGTGGAGTTAGTTTACAAGAGTAGAAAAGG GGTTTTATTTCGAGAGCTTGTCTGGTTATTGTGCTTTGCACCTGTTGGTTTGCTAATCACAGGAACTTTCCGGTGGCACT ATATGGGAAGCGTTCGCGGTTGGGTTGTCACTTACTGGTTCTAA
Upstream 100 bases:
>100_bases TACCAAAGAGGAGTTAAGCCGACTACTGTAAAGGCGTACAAAAAAATAAGTGTTTACGTAAAATTAAGCTAACAATGCAT TTAAGAGTGATTCGCAATGC
Downstream 100 bases:
>100_bases CTTTTTCGTGATAGTCCTTTGGTGTGGCTTCTTTTTCTTGGTGGCTAATCCGTGAATATTGGTTTTAGTCGTACTTGGTT GTAAGGTTGGTCGAACGAAT
Product: membrane protein, phage gene
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 67; Mature: 66
Protein sequence:
>67_residues MAVSLRSSIAKRRSHLNVELVYKSRKGVLFRELVWLLCFAPVGLLITGTFRWHYMGSVRGWVVTYWF
Sequences:
>Translated_67_residues MAVSLRSSIAKRRSHLNVELVYKSRKGVLFRELVWLLCFAPVGLLITGTFRWHYMGSVRGWVVTYWF >Mature_66_residues AVSLRSSIAKRRSHLNVELVYKSRKGVLFRELVWLLCFAPVGLLITGTFRWHYMGSVRGWVVTYWF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7890; Mature: 7758
Theoretical pI: Translated: 11.49; Mature: 11.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVSLRSSIAKRRSHLNVELVYKSRKGVLFRELVWLLCFAPVGLLITGTFRWHYMGSVRG CCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHEEECCEEEEEECCCCC WVVTYWF EEEEEEC >Mature Secondary Structure AVSLRSSIAKRRSHLNVELVYKSRKGVLFRELVWLLCFAPVGLLITGTFRWHYMGSVRG CCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHEEECCEEEEEECCCCC WVVTYWF EEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA