| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695140
Identifier: 209695140
GI number: 209695140
Start: 1744395
End: 1744658
Strand: Reverse
Name: 209695140
Synonym: VSAL_I1641
Alternate gene names: NA
Gene position: 1744658-1744395 (Counterclockwise)
Preceding gene: 209695141
Following gene: 209695139
Centisome position: 52.47
GC content: 35.98
Gene sequence:
>264_bases ATGGTTAATTTTGAATTTGATGAAGTTAAGAGTAGCTCGAATCTTGAAAAACATGGTGTGGATTTCAATGTAGCTCAATT GCTTTGGAATGACCCAGATTTAATCGAGATCCCAGTAAATACTCACGATGAACCAAGATATGTCGTAATCGCAATGCTTA ATGGTAAACATTGGACAGGCGTTATTACATATCGAGGTCAAAATATCCGAATAATTTCTGTTCGACGCTCAAGAAAAGGT GAGGTAAAGGTTTATGAAAGCTAA
Upstream 100 bases:
>100_bases ATAATCGCATAGTAGTAAACGTGTTATGCAGACGTTAACCGTCTTTTCGAAGCATCATCGAAAGTTGCCTTTTGAGTAAT AATGGTATATTTTTAACTCT
Downstream 100 bases:
>100_bases TGAATTTGATGCAAAATTTGACGATGGCGACGATATTCTAGGCGATTTAGATTTATCTAAATCTAAGCGTCCAATGCAAA GTCAAAAACGAGTAAATGTT
Product: phage protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 87; Mature: 87
Protein sequence:
>87_residues MVNFEFDEVKSSSNLEKHGVDFNVAQLLWNDPDLIEIPVNTHDEPRYVVIAMLNGKHWTGVITYRGQNIRIISVRRSRKG EVKVYES
Sequences:
>Translated_87_residues MVNFEFDEVKSSSNLEKHGVDFNVAQLLWNDPDLIEIPVNTHDEPRYVVIAMLNGKHWTGVITYRGQNIRIISVRRSRKG EVKVYES >Mature_87_residues MVNFEFDEVKSSSNLEKHGVDFNVAQLLWNDPDLIEIPVNTHDEPRYVVIAMLNGKHWTGVITYRGQNIRIISVRRSRKG EVKVYES
Specific function: Unknown
COG id: COG2929
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10101; Mature: 10101
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNFEFDEVKSSSNLEKHGVDFNVAQLLWNDPDLIEIPVNTHDEPRYVVIAMLNGKHWTG CCCCCCHHCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCEEE VITYRGQNIRIISVRRSRKGEVKVYES EEEECCCCEEEEEEECCCCCCEEEEEC >Mature Secondary Structure MVNFEFDEVKSSSNLEKHGVDFNVAQLLWNDPDLIEIPVNTHDEPRYVVIAMLNGKHWTG CCCCCCHHCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCEEE VITYRGQNIRIISVRRSRKGEVKVYES EEEECCCCEEEEEEECCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA