| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695139
Identifier: 209695139
GI number: 209695139
Start: 1744160
End: 1744405
Strand: Reverse
Name: 209695139
Synonym: VSAL_I1640
Alternate gene names: NA
Gene position: 1744405-1744160 (Counterclockwise)
Preceding gene: 209695140
Following gene: 209695135
Centisome position: 52.46
GC content: 37.8
Gene sequence:
>246_bases ATGAAAGCTAATGAATTTGATGCAAAATTTGACGATGGCGACGATATTCTAGGCGATTTAGATTTATCTAAATCTAAGCG TCCAATGCAAAGTCAAAAACGAGTAAATGTTGATTTTCCAACATGGATGATCGAATCATTAGATCGTGAAGCGAATCGTA TAGGTGTAACTCGCCAATCGATTATTAAAGTTTGGTTAGCGGAAAGGTTAGAAAGTGTAGCGGCGAATCACACAGCAAGT CACTGA
Upstream 100 bases:
>100_bases ATGCTTAATGGTAAACATTGGACAGGCGTTATTACATATCGAGGTCAAAATATCCGAATAATTTCTGTTCGACGCTCAAG AAAAGGTGAGGTAAAGGTTT
Downstream 100 bases:
>100_bases TATAAAAACGGTTAACAAACGACTATGGTGTCAATAACTAAATTTTAGCGTGGTTTTCATTCCACATGACAGCACCTCGT ATCATTGAATTATTTTTCTA
Product: phage protein
Products: NA
Alternate protein names: Helix-Turn-Helix Protein CopG Family; Conserved Domain Protein
Number of amino acids: Translated: 81; Mature: 81
Protein sequence:
>81_residues MKANEFDAKFDDGDDILGDLDLSKSKRPMQSQKRVNVDFPTWMIESLDREANRIGVTRQSIIKVWLAERLESVAANHTAS H
Sequences:
>Translated_81_residues MKANEFDAKFDDGDDILGDLDLSKSKRPMQSQKRVNVDFPTWMIESLDREANRIGVTRQSIIKVWLAERLESVAANHTAS H >Mature_81_residues MKANEFDAKFDDGDDILGDLDLSKSKRPMQSQKRVNVDFPTWMIESLDREANRIGVTRQSIIKVWLAERLESVAANHTAS H
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9244; Mature: 9244
Theoretical pI: Translated: 5.70; Mature: 5.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKANEFDAKFDDGDDILGDLDLSKSKRPMQSQKRVNVDFPTWMIESLDREANRIGVTRQS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH IIKVWLAERLESVAANHTASH HHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKANEFDAKFDDGDDILGDLDLSKSKRPMQSQKRVNVDFPTWMIESLDREANRIGVTRQS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH IIKVWLAERLESVAANHTASH HHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA