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The map label for this gene is yeaM [H]

Identifier: 209695112

GI number: 209695112

Start: 1718165

End: 1718992

Strand: Reverse

Name: yeaM [H]

Synonym: VSAL_I1611

Alternate gene names: 209695112

Gene position: 1718992-1718165 (Counterclockwise)

Preceding gene: 209695114

Following gene: 209695108

Centisome position: 51.7

GC content: 37.32

Gene sequence:

>828_bases
ATGACACCGGATATAGCGATTACGACATATAAAAAATTCATGCCTAAATTGACAGAAACACTGCCAACAGATGTGTTCTG
CCACTATTTTTTTATTGAAGCAAAAACAGAAACTTTGCCACATTCGTATTCTTGGGGGCAGTTGCATTTAATTAAGCAAG
GCGTGTTAGAAATGGAAGTCGATCAACAGAAAATGGTGTGCCCTGCAAACTATACGATTTGGACTCCTCCTCACCAAAAG
CACCGAGCATTTAATCGGAGTGACATCGAATATTGCGCCATTAATATTACGGCAGAGTTGAGTGAAAAGTTTCCTAAACA
CGCGTGTATGATCCCATTAACACCGTTATTAAGAGCTATAATTGATGACTTGATTGAACGAAAAACAACGATGGTGAGCT
CAGAAGAAGATAAATGCCTTAGCTATGTGCTTATGGATAGATTAGTAAAAATAAACCCAATTGAAATTTATTTACCATCA
ACGCAAGATAAGTTATTAGCACCTATTTTGACGCAACTGGAAGAAACGCCTGAAGATGATTCGAGTTTATCTGTTTGGGC
TAAACGTGTATTTAGTACAGAAAGGACGCTAGCCAGACGTTTTCAAAAAGAATTAAAAATGAGCTTTAATGATTGGCGAC
AGAGAGCAAAACTAGTTAAGGCAATGACACTATTGAAAGAATCCATAAGCATTAATGAAATAGCGTATCAGCTTGGGTAT
AGCCAAGGGTCTTCTTTTATTAAAATGTTCCGAAAGCATACTGGTGTAACTCCGGAACAATTTAGAAAGCAAAATGAAAC
GCTAACAGTGGAGATAACCAGTAAATGA

Upstream 100 bases:

>100_bases
AAATACAGCAGTGATTGGGAAAAATAAATTCATAATAATCTCTGTTATTGATAATTAACAGAATTGTCACACTAATACAG
AGATCAGTGGTATACCATTT

Downstream 100 bases:

>100_bases
CAGTCAGTTGCTTGAATTATGATGATAAAAAGCCGCTAATATATAGCGGCTTTCTTGTTTTAGACGTGATGGTTATTCAC
TTAGTTATTCAGCGCAACGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MTPDIAITTYKKFMPKLTETLPTDVFCHYFFIEAKTETLPHSYSWGQLHLIKQGVLEMEVDQQKMVCPANYTIWTPPHQK
HRAFNRSDIEYCAINITAELSEKFPKHACMIPLTPLLRAIIDDLIERKTTMVSSEEDKCLSYVLMDRLVKINPIEIYLPS
TQDKLLAPILTQLEETPEDDSSLSVWAKRVFSTERTLARRFQKELKMSFNDWRQRAKLVKAMTLLKESISINEIAYQLGY
SQGSSFIKMFRKHTGVTPEQFRKQNETLTVEITSK

Sequences:

>Translated_275_residues
MTPDIAITTYKKFMPKLTETLPTDVFCHYFFIEAKTETLPHSYSWGQLHLIKQGVLEMEVDQQKMVCPANYTIWTPPHQK
HRAFNRSDIEYCAINITAELSEKFPKHACMIPLTPLLRAIIDDLIERKTTMVSSEEDKCLSYVLMDRLVKINPIEIYLPS
TQDKLLAPILTQLEETPEDDSSLSVWAKRVFSTERTLARRFQKELKMSFNDWRQRAKLVKAMTLLKESISINEIAYQLGY
SQGSSFIKMFRKHTGVTPEQFRKQNETLTVEITSK
>Mature_274_residues
TPDIAITTYKKFMPKLTETLPTDVFCHYFFIEAKTETLPHSYSWGQLHLIKQGVLEMEVDQQKMVCPANYTIWTPPHQKH
RAFNRSDIEYCAINITAELSEKFPKHACMIPLTPLLRAIIDDLIERKTTMVSSEEDKCLSYVLMDRLVKINPIEIYLPST
QDKLLAPILTQLEETPEDDSSLSVWAKRVFSTERTLARRFQKELKMSFNDWRQRAKLVKAMTLLKESISINEIAYQLGYS
QGSSFIKMFRKHTGVTPEQFRKQNETLTVEITSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=235, Percent_Identity=28.936170212766, Blast_Score=102, Evalue=4e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 31990; Mature: 31859

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPDIAITTYKKFMPKLTETLPTDVFCHYFFIEAKTETLPHSYSWGQLHLIKQGVLEMEV
CCCCCEEHHHHHHHHHHHHHCCHHHEEEEHEEEEECCCCCCCCCCCHHHHHHHHHHHHCC
DQQKMVCPANYTIWTPPHQKHRAFNRSDIEYCAINITAELSEKFPKHACMIPLTPLLRAI
CCCCEECCCCCEEECCCCHHHHCCCCCCCEEEEEEEEHHHHHCCCCCEEECCHHHHHHHH
IDDLIERKTTMVSSEEDKCLSYVLMDRLVKINPIEIYLPSTQDKLLAPILTQLEETPEDD
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC
SSLSVWAKRVFSTERTLARRFQKELKMSFNDWRQRAKLVKAMTLLKESISINEIAYQLGY
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
SQGSSFIKMFRKHTGVTPEQFRKQNETLTVEITSK
CCCHHHHHHHHHHCCCCHHHHHCCCCEEEEEEECC
>Mature Secondary Structure 
TPDIAITTYKKFMPKLTETLPTDVFCHYFFIEAKTETLPHSYSWGQLHLIKQGVLEMEV
CCCCEEHHHHHHHHHHHHHCCHHHEEEEHEEEEECCCCCCCCCCCHHHHHHHHHHHHCC
DQQKMVCPANYTIWTPPHQKHRAFNRSDIEYCAINITAELSEKFPKHACMIPLTPLLRAI
CCCCEECCCCCEEECCCCHHHHCCCCCCCEEEEEEEEHHHHHCCCCCEEECCHHHHHHHH
IDDLIERKTTMVSSEEDKCLSYVLMDRLVKINPIEIYLPSTQDKLLAPILTQLEETPEDD
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC
SSLSVWAKRVFSTERTLARRFQKELKMSFNDWRQRAKLVKAMTLLKESISINEIAYQLGY
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
SQGSSFIKMFRKHTGVTPEQFRKQNETLTVEITSK
CCCHHHHHHHHHHCCCCHHHHHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]