Click here to switch to the map view.

The map label for this gene is ykgB [H]

Identifier: 209695031

GI number: 209695031

Start: 1628943

End: 1629386

Strand: Reverse

Name: ykgB [H]

Synonym: VSAL_I1526

Alternate gene names: 209695031

Gene position: 1629386-1628943 (Counterclockwise)

Preceding gene: 209695039

Following gene: 209695029

Centisome position: 49.0

GC content: 35.14

Gene sequence:

>444_bases
ATGAACAGTAAAACAATAGAAAGGACAAACGCAACCACCTCATTAGGCTATAAAATCGGAGTCTTTGGCGTGGTTCTTAC
CCTTTTGTGGATTGGGGTATTTAAATTTACACCAACAGAAGCTGCCGCTATCGAACCACTTGTTGCTAATCACCCTTTGA
TCGGTTGGATATATAATTTTCTATCCGTGCAAATGGTCTCAAATATAATTGGCTTGACTGAAATAATCATTGCAATAGGA
CTTATCGCTGGATTTTTTAACCCTAAAATTGGTTATCTATCAGGTCTCTTAGCCCTATTTACTTTTATTACAACACTCAG
TTTCATGATCACTACACCAAACACATGGAAGGTTGTAGATGGTGTCTTAATTACTAATTTCTTTTTACTTAAAGATATTG
TATTTGTTGCTATTGCTTTACTTGTGATAGAGCGTAATAAATAG

Upstream 100 bases:

>100_bases
AAAATAAACGGTTTAGTTCAAAAACCAGTTGACTTAACTAAAATAAACGATAAATTAAACTAAACCGTTTAGTTTAATTT
ATTAATAAAGGAAGTAACAA

Downstream 100 bases:

>100_bases
CAGTATGAGGTTAATCTAATATAACGGATTAACCTCAACTTTAACTCTATTACTCATAAAAAGATTAATTTAACTTACTA
ACATTAATTTCTGTTGTTAC

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MNSKTIERTNATTSLGYKIGVFGVVLTLLWIGVFKFTPTEAAAIEPLVANHPLIGWIYNFLSVQMVSNIIGLTEIIIAIG
LIAGFFNPKIGYLSGLLALFTFITTLSFMITTPNTWKVVDGVLITNFFLLKDIVFVAIALLVIERNK

Sequences:

>Translated_147_residues
MNSKTIERTNATTSLGYKIGVFGVVLTLLWIGVFKFTPTEAAAIEPLVANHPLIGWIYNFLSVQMVSNIIGLTEIIIAIG
LIAGFFNPKIGYLSGLLALFTFITTLSFMITTPNTWKVVDGVLITNFFLLKDIVFVAIALLVIERNK
>Mature_147_residues
MNSKTIERTNATTSLGYKIGVFGVVLTLLWIGVFKFTPTEAAAIEPLVANHPLIGWIYNFLSVQMVSNIIGLTEIIIAIG
LIAGFFNPKIGYLSGLLALFTFITTLSFMITTPNTWKVVDGVLITNFFLLKDIVFVAIALLVIERNK

Specific function: Unknown

COG id: COG3059

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081715, Length=166, Percent_Identity=31.9277108433735, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007339 [H]

Pfam domain/function: PF04224 DUF417 [H]

EC number: NA

Molecular weight: Translated: 16169; Mature: 16169

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSKTIERTNATTSLGYKIGVFGVVLTLLWIGVFKFTPTEAAAIEPLVANHPLIGWIYNF
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHCCCHHHHHHHH
LSVQMVSNIIGLTEIIIAIGLIAGFFNPKIGYLSGLLALFTFITTLSFMITTPNTWKVVD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
GVLITNFFLLKDIVFVAIALLVIERNK
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNSKTIERTNATTSLGYKIGVFGVVLTLLWIGVFKFTPTEAAAIEPLVANHPLIGWIYNF
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHCCCHHHHHHHH
LSVQMVSNIIGLTEIIIAIGLIAGFFNPKIGYLSGLLALFTFITTLSFMITTPNTWKVVD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
GVLITNFFLLKDIVFVAIALLVIERNK
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]