| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is pheC [H]
Identifier: 209695039
GI number: 209695039
Start: 1634685
End: 1635446
Strand: Reverse
Name: pheC [H]
Synonym: VSAL_I1534
Alternate gene names: 209695039
Gene position: 1635446-1634685 (Counterclockwise)
Preceding gene: 209695042
Following gene: 209695031
Centisome position: 49.18
GC content: 38.19
Gene sequence:
>762_bases ATGCAAAAGAAACTATTATGCCTTTCAGTATTGCTTGCTGCTTCATGTTCAGCACAAGCAGATAGATTAGATGACATTCA AGAATCCGGCGTCATTCGTGTCGGCACAACGGGCGACTATAAACCCTTCTCTTCCTTCGATGGAAAAAACTATACAGGGT ATGACATTGATGTTGCTAAACACATCGCAGATCAATTAGGTGTAAAGCTTGAATTAGTTAAAACGTCTTGGAAAAACCTT ATTCCAGATCTAAATGCAGATAAATATGACATTGCAATGGGTGGAATAACACGAAAAATGCAACGCCAATTACACGCAGA ACAAACTCAAGGTTATATGACGTTTGGAAAGTGCTTTCTTGTTGCTAAAGGAAAAGCCGACGCATTCAATACCATCGATA AAGTGAACATGAAAGAAGTACGTGTTGGCATCAATATTGGTGGTACCAATGAAATTTTTGCAGACGCTCATCTACAAAAT GCGACCTTTACACGTTATGAGAATAATCTTGATGTCCCACAAGCCGTCGCCACTGGTAAAGTTGATGTCATGGTAACCGA AACACCTGAAGCATTATTTTATCAAGCAACCGATAAACGATTGGAAGCCGCGCGTTGTGAGACCCCATTTACTAAAAGCC AATTCGGCTATCTTGTCCCTAAAGGAGAGCAAGAACTCTTAAATACGGTTAATTTCATTATGGATGAAATGAAATTAAAA AATATTGATGAACAGTTTATGAAAAACAACTCATTAAGATAA
Upstream 100 bases:
>100_bases TAAAATATGTTTTTTTATGGTTACTGACTGAATGGTTTGATGTGTTACTTTAACAAAAGGTGATAGATTTGTTATCTAAC TTAATCAATAAAAATATCTT
Downstream 100 bases:
>100_bases CGTCACGCTATAAATATTTGCCTTAATTCTCTTAATTATGATTAGCAGACTTACTGGAGGTGAGTGTTTTACCTCCTTTT GACCTCAATTCAATTTCCAT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: Prephenate dehydratase; Arogenate dehydratase [H]
Number of amino acids: Translated: 253; Mature: 253
Protein sequence:
>253_residues MQKKLLCLSVLLAASCSAQADRLDDIQESGVIRVGTTGDYKPFSSFDGKNYTGYDIDVAKHIADQLGVKLELVKTSWKNL IPDLNADKYDIAMGGITRKMQRQLHAEQTQGYMTFGKCFLVAKGKADAFNTIDKVNMKEVRVGINIGGTNEIFADAHLQN ATFTRYENNLDVPQAVATGKVDVMVTETPEALFYQATDKRLEAARCETPFTKSQFGYLVPKGEQELLNTVNFIMDEMKLK NIDEQFMKNNSLR
Sequences:
>Translated_253_residues MQKKLLCLSVLLAASCSAQADRLDDIQESGVIRVGTTGDYKPFSSFDGKNYTGYDIDVAKHIADQLGVKLELVKTSWKNL IPDLNADKYDIAMGGITRKMQRQLHAEQTQGYMTFGKCFLVAKGKADAFNTIDKVNMKEVRVGINIGGTNEIFADAHLQN ATFTRYENNLDVPQAVATGKVDVMVTETPEALFYQATDKRLEAARCETPFTKSQFGYLVPKGEQELLNTVNFIMDEMKLK NIDEQFMKNNSLR >Mature_253_residues MQKKLLCLSVLLAASCSAQADRLDDIQESGVIRVGTTGDYKPFSSFDGKNYTGYDIDVAKHIADQLGVKLELVKTSWKNL IPDLNADKYDIAMGGITRKMQRQLHAEQTQGYMTFGKCFLVAKGKADAFNTIDKVNMKEVRVGINIGGTNEIFADAHLQN ATFTRYENNLDVPQAVATGKVDVMVTETPEALFYQATDKRLEAARCETPFTKSQFGYLVPKGEQELLNTVNFIMDEMKLK NIDEQFMKNNSLR
Specific function: Forms alternative pathway for phenylalanine biosynthesis. Can catalyze two reactions:prephenate dehydratase and arogenate dehydratase. May have a role in chemotaxis or transport [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788228, Length=239, Percent_Identity=26.3598326359833, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787031, Length=231, Percent_Identity=24.2424242424242, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788649, Length=190, Percent_Identity=27.8947368421053, Blast_Score=62, Evalue=3e-11,
Paralogues:
None
Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: =4.2.1.51; =4.2.1.91 [H]
Molecular weight: Translated: 28301; Mature: 28301
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01039 SBP_BACTERIAL_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKKLLCLSVLLAASCSAQADRLDDIQESGVIRVGTTGDYKPFSSFDGKNYTGYDIDVAK CCCHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHH HIADQLGVKLELVKTSWKNLIPDLNADKYDIAMGGITRKMQRQLHAEQTQGYMTFGKCFL HHHHHHCCEEEEHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEE VAKGKADAFNTIDKVNMKEVRVGINIGGTNEIFADAHLQNATFTRYENNLDVPQAVATGK EECCCCCHHHHHHHCCHHHEEEEEEECCCCCEEECCCCCCCEEEEECCCCCCCHHHHCCC VDVMVTETPEALFYQATDKRLEAARCETPFTKSQFGYLVPKGEQELLNTVNFIMDEMKLK EEEEEECCCHHEEEHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHH NIDEQFMKNNSLR CHHHHHHHCCCCC >Mature Secondary Structure MQKKLLCLSVLLAASCSAQADRLDDIQESGVIRVGTTGDYKPFSSFDGKNYTGYDIDVAK CCCHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHH HIADQLGVKLELVKTSWKNLIPDLNADKYDIAMGGITRKMQRQLHAEQTQGYMTFGKCFL HHHHHHCCEEEEHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEE VAKGKADAFNTIDKVNMKEVRVGINIGGTNEIFADAHLQNATFTRYENNLDVPQAVATGK EECCCCCHHHHHHHCCHHHEEEEEEECCCCCEEECCCCCCCEEEEECCCCCCCHHHHCCC VDVMVTETPEALFYQATDKRLEAARCETPFTKSQFGYLVPKGEQELLNTVNFIMDEMKLK EEEEEECCCHHEEEHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHH NIDEQFMKNNSLR CHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1733946; 10984043; 8515238; 7604006 [H]