| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is yecA [C]
Identifier: 209694919
GI number: 209694919
Start: 1509379
End: 1509711
Strand: Reverse
Name: yecA [C]
Synonym: VSAL_I1393
Alternate gene names: 209694919
Gene position: 1509711-1509379 (Counterclockwise)
Preceding gene: 209694923
Following gene: 209694916
Centisome position: 45.4
GC content: 37.84
Gene sequence:
>333_bases ATGTCTAAAATGTTCTTCAAAGGTCGTATCGAGACTCGTCAAAACCACGTTAAATCTGGTTTTAACACTAAGCGTGACGT TAAGTTAGGTACTGAAGAAGCACCACTGACTTTAGTTGTTCAAACAGAAGAACGTAAAGTTGAAATTGAAGCGCAGATTA CTGAGCACGATTTATTCGCAAACATCGAAGTGAATGCTGAAAAAGAAGAGAATATTCTTGAGCTTGAAGGCGTACTAAAC AAGCCAAAAACAACTCGCTTTGAAAAAACACCTAACCGCAATGAAGCATGTCCTTGTGGTAGCGGTCAAAAATACAAAAA ATGTTGTGCTTAA
Upstream 100 bases:
>100_bases TTCCAAACTCATTTTTATATTTCGTTATCACTTTATCCATCTTCTTGTTGATGGTATAAAGTGGCTAAAATACTGTGTTC AAAAATTATAAGGCTCCAAG
Downstream 100 bases:
>100_bases TCACTATTTTAAATAGCTAAGCTAAACACAAAAAAGAGCCTCTGTTATCACTAACATGAGGCTCTTTTTTTATGTGCATT TTCTTATTACCTGTAACTAT
Product: hypothetical protein
Products: NA
Alternate protein names: SEC-C Motif Domain-Containing Protein; SEC-C Motif Domain Protein; Preprotein Translocase Subunit-Like Protein; ATPase
Number of amino acids: Translated: 110; Mature: 109
Protein sequence:
>110_residues MSKMFFKGRIETRQNHVKSGFNTKRDVKLGTEEAPLTLVVQTEERKVEIEAQITEHDLFANIEVNAEKEENILELEGVLN KPKTTRFEKTPNRNEACPCGSGQKYKKCCA
Sequences:
>Translated_110_residues MSKMFFKGRIETRQNHVKSGFNTKRDVKLGTEEAPLTLVVQTEERKVEIEAQITEHDLFANIEVNAEKEENILELEGVLN KPKTTRFEKTPNRNEACPCGSGQKYKKCCA >Mature_109_residues SKMFFKGRIETRQNHVKSGFNTKRDVKLGTEEAPLTLVVQTEERKVEIEAQITEHDLFANIEVNAEKEENILELEGVLNK PKTTRFEKTPNRNEACPCGSGQKYKKCCA
Specific function: Unknown
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12571; Mature: 12440
Theoretical pI: Translated: 7.94; Mature: 7.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKMFFKGRIETRQNHVKSGFNTKRDVKLGTEEAPLTLVVQTEERKVEIEAQITEHDLFA CCCCEECCCCCCHHHHHHCCCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEECCEEEE NIEVNAEKEENILELEGVLNKPKTTRFEKTPNRNEACPCGSGQKYKKCCA EEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC >Mature Secondary Structure SKMFFKGRIETRQNHVKSGFNTKRDVKLGTEEAPLTLVVQTEERKVEIEAQITEHDLFA CCCEECCCCCCHHHHHHCCCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEECCEEEE NIEVNAEKEENILELEGVLNKPKTTRFEKTPNRNEACPCGSGQKYKKCCA EEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA