| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694821
Identifier: 209694821
GI number: 209694821
Start: 1396332
End: 1397294
Strand: Reverse
Name: 209694821
Synonym: VSAL_I1286
Alternate gene names: NA
Gene position: 1397294-1396332 (Counterclockwise)
Preceding gene: 209694822
Following gene: 209694816
Centisome position: 42.02
GC content: 43.09
Gene sequence:
>963_bases ATGTTTGATTTATCACGTATTTCGGGTTTCGAAAACGCATCAATTCGCCAGACTGACACTTTACAAATCTTATGGGGCGG TTATGGTGAATTGGTGCGTTTGCATTTAACACAAGCTCCAACCTCTTCTATCATCATCAAACAGATGACCTTACCCAAGC CTAAAGTGCATCCTAGAGGGTGGAATACTGATCTCTCACACCAACGTAAACTCAACTCCTACCAAGTAGAACTCAATTGG TATCAAACTTACGCCAATTCGGTTTCTACCCATTGTCCTGTACCGCGCTGTTTATACGTAGAGCAGCGTGATAACGAGCT GATCTTAGTATTGGAAGATTTAGCGACCTGCGGATTTCCAATCGTAAAAACAAACGCCTCTATTAATGAAGCTAAAGCCT GCTTAACGTGGCTTGCGAACTTTCATGCTGAACACATGAATGTTGAACCGATTGGATTATGGCAAACAGGCACTTACTGG CATTTAGATACGCGACCTGATGAGTTTGAAGCCTTAACGGATTTACCCTTAAAGCAAGCGGCAGTTAAGATTGATGAAAC ACTAAAAAACACCCGTTACCAAACCTTAGTTCATGGTGATGCTAAGTTAGCGAACTTCTGTTTTTCTGAAGGTGGTAATC AGGTGGCTGCGGTTGATTTCCAATACGTAGGTAAAGGCTGCGGGATGAAGGATGTGATCTTGTTTATCAGCAGTGCGGTT ATGCCAGAACAATGTGCAGAGCTTGAGAACGAATTATTGGATAATTACTTTAGCCAACTTAAAGCCTCCCTATTGCGTTT AGGGCGCACCGAGGCAAGTGACGATATTGAGCAAGAATGGCGACCACTTTTCAGTGTTGCTTGGGCTGATTTTCAACGCT TTGTAAAAGGCTGGAGCCCAGAGCATTGGAAGATTAATGGGTATACTGAGGGACTTAAAGAAAGAGCGTTGAAGGGTTTG TAA
Upstream 100 bases:
>100_bases CGGCTGCTGTGAATGTGATCATGTACGATCGCATGGCGAAAGGTGAAAACTTCTCAAACCATAAGTAGCCTACATTTAAA CTAAATAAAGGAACTCGAAC
Downstream 100 bases:
>100_bases GGAAAGATCGCAAGTGAGCGACCTTTTTTATGTGGGTTTGGTGGGTGACTTGTTTTTTGGCATCTCCAATTTAGCAACGA TAGCCTCTAGGTAATGATAA
Product: hypothetical protein
Products: NA
Alternate protein names: Protein Containing Kinase Domain; Kinase Domain-Containing Protein
Number of amino acids: Translated: 320; Mature: 320
Protein sequence:
>320_residues MFDLSRISGFENASIRQTDTLQILWGGYGELVRLHLTQAPTSSIIIKQMTLPKPKVHPRGWNTDLSHQRKLNSYQVELNW YQTYANSVSTHCPVPRCLYVEQRDNELILVLEDLATCGFPIVKTNASINEAKACLTWLANFHAEHMNVEPIGLWQTGTYW HLDTRPDEFEALTDLPLKQAAVKIDETLKNTRYQTLVHGDAKLANFCFSEGGNQVAAVDFQYVGKGCGMKDVILFISSAV MPEQCAELENELLDNYFSQLKASLLRLGRTEASDDIEQEWRPLFSVAWADFQRFVKGWSPEHWKINGYTEGLKERALKGL
Sequences:
>Translated_320_residues MFDLSRISGFENASIRQTDTLQILWGGYGELVRLHLTQAPTSSIIIKQMTLPKPKVHPRGWNTDLSHQRKLNSYQVELNW YQTYANSVSTHCPVPRCLYVEQRDNELILVLEDLATCGFPIVKTNASINEAKACLTWLANFHAEHMNVEPIGLWQTGTYW HLDTRPDEFEALTDLPLKQAAVKIDETLKNTRYQTLVHGDAKLANFCFSEGGNQVAAVDFQYVGKGCGMKDVILFISSAV MPEQCAELENELLDNYFSQLKASLLRLGRTEASDDIEQEWRPLFSVAWADFQRFVKGWSPEHWKINGYTEGLKERALKGL >Mature_320_residues MFDLSRISGFENASIRQTDTLQILWGGYGELVRLHLTQAPTSSIIIKQMTLPKPKVHPRGWNTDLSHQRKLNSYQVELNW YQTYANSVSTHCPVPRCLYVEQRDNELILVLEDLATCGFPIVKTNASINEAKACLTWLANFHAEHMNVEPIGLWQTGTYW HLDTRPDEFEALTDLPLKQAAVKIDETLKNTRYQTLVHGDAKLANFCFSEGGNQVAAVDFQYVGKGCGMKDVILFISSAV MPEQCAELENELLDNYFSQLKASLLRLGRTEASDDIEQEWRPLFSVAWADFQRFVKGWSPEHWKINGYTEGLKERALKGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36458; Mature: 36458
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDLSRISGFENASIRQTDTLQILWGGYGELVRLHLTQAPTSSIIIKQMTLPKPKVHPRG CCCCHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCC WNTDLSHQRKLNSYQVELNWYQTYANSVSTHCPVPRCLYVEQRDNELILVLEDLATCGFP CCCCCHHHHCCCCEEEEEEHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEHHHHCCCC IVKTNASINEAKACLTWLANFHAEHMNVEPIGLWQTGTYWHLDTRPDEFEALTDLPLKQA EEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCHHHHHHCCCHHHH AVKIDETLKNTRYQTLVHGDAKLANFCFSEGGNQVAAVDFQYVGKGCGMKDVILFISSAV HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEEEHEECCCCCCHHHHHHHHHHCC MPEQCAELENELLDNYFSQLKASLLRLGRTEASDDIEQEWRPLFSVAWADFQRFVKGWSP CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC EHWKINGYTEGLKERALKGL CCEEECCHHHHHHHHHHCCC >Mature Secondary Structure MFDLSRISGFENASIRQTDTLQILWGGYGELVRLHLTQAPTSSIIIKQMTLPKPKVHPRG CCCCHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCC WNTDLSHQRKLNSYQVELNWYQTYANSVSTHCPVPRCLYVEQRDNELILVLEDLATCGFP CCCCCHHHHCCCCEEEEEEHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEHHHHCCCC IVKTNASINEAKACLTWLANFHAEHMNVEPIGLWQTGTYWHLDTRPDEFEALTDLPLKQA EEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCHHHHHHCCCHHHH AVKIDETLKNTRYQTLVHGDAKLANFCFSEGGNQVAAVDFQYVGKGCGMKDVILFISSAV HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEEEHEECCCCCCHHHHHHHHHHCC MPEQCAELENELLDNYFSQLKASLLRLGRTEASDDIEQEWRPLFSVAWADFQRFVKGWSP CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC EHWKINGYTEGLKERALKGL CCEEECCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA