Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694821

Identifier: 209694821

GI number: 209694821

Start: 1396332

End: 1397294

Strand: Reverse

Name: 209694821

Synonym: VSAL_I1286

Alternate gene names: NA

Gene position: 1397294-1396332 (Counterclockwise)

Preceding gene: 209694822

Following gene: 209694816

Centisome position: 42.02

GC content: 43.09

Gene sequence:

>963_bases
ATGTTTGATTTATCACGTATTTCGGGTTTCGAAAACGCATCAATTCGCCAGACTGACACTTTACAAATCTTATGGGGCGG
TTATGGTGAATTGGTGCGTTTGCATTTAACACAAGCTCCAACCTCTTCTATCATCATCAAACAGATGACCTTACCCAAGC
CTAAAGTGCATCCTAGAGGGTGGAATACTGATCTCTCACACCAACGTAAACTCAACTCCTACCAAGTAGAACTCAATTGG
TATCAAACTTACGCCAATTCGGTTTCTACCCATTGTCCTGTACCGCGCTGTTTATACGTAGAGCAGCGTGATAACGAGCT
GATCTTAGTATTGGAAGATTTAGCGACCTGCGGATTTCCAATCGTAAAAACAAACGCCTCTATTAATGAAGCTAAAGCCT
GCTTAACGTGGCTTGCGAACTTTCATGCTGAACACATGAATGTTGAACCGATTGGATTATGGCAAACAGGCACTTACTGG
CATTTAGATACGCGACCTGATGAGTTTGAAGCCTTAACGGATTTACCCTTAAAGCAAGCGGCAGTTAAGATTGATGAAAC
ACTAAAAAACACCCGTTACCAAACCTTAGTTCATGGTGATGCTAAGTTAGCGAACTTCTGTTTTTCTGAAGGTGGTAATC
AGGTGGCTGCGGTTGATTTCCAATACGTAGGTAAAGGCTGCGGGATGAAGGATGTGATCTTGTTTATCAGCAGTGCGGTT
ATGCCAGAACAATGTGCAGAGCTTGAGAACGAATTATTGGATAATTACTTTAGCCAACTTAAAGCCTCCCTATTGCGTTT
AGGGCGCACCGAGGCAAGTGACGATATTGAGCAAGAATGGCGACCACTTTTCAGTGTTGCTTGGGCTGATTTTCAACGCT
TTGTAAAAGGCTGGAGCCCAGAGCATTGGAAGATTAATGGGTATACTGAGGGACTTAAAGAAAGAGCGTTGAAGGGTTTG
TAA

Upstream 100 bases:

>100_bases
CGGCTGCTGTGAATGTGATCATGTACGATCGCATGGCGAAAGGTGAAAACTTCTCAAACCATAAGTAGCCTACATTTAAA
CTAAATAAAGGAACTCGAAC

Downstream 100 bases:

>100_bases
GGAAAGATCGCAAGTGAGCGACCTTTTTTATGTGGGTTTGGTGGGTGACTTGTTTTTTGGCATCTCCAATTTAGCAACGA
TAGCCTCTAGGTAATGATAA

Product: hypothetical protein

Products: NA

Alternate protein names: Protein Containing Kinase Domain; Kinase Domain-Containing Protein

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MFDLSRISGFENASIRQTDTLQILWGGYGELVRLHLTQAPTSSIIIKQMTLPKPKVHPRGWNTDLSHQRKLNSYQVELNW
YQTYANSVSTHCPVPRCLYVEQRDNELILVLEDLATCGFPIVKTNASINEAKACLTWLANFHAEHMNVEPIGLWQTGTYW
HLDTRPDEFEALTDLPLKQAAVKIDETLKNTRYQTLVHGDAKLANFCFSEGGNQVAAVDFQYVGKGCGMKDVILFISSAV
MPEQCAELENELLDNYFSQLKASLLRLGRTEASDDIEQEWRPLFSVAWADFQRFVKGWSPEHWKINGYTEGLKERALKGL

Sequences:

>Translated_320_residues
MFDLSRISGFENASIRQTDTLQILWGGYGELVRLHLTQAPTSSIIIKQMTLPKPKVHPRGWNTDLSHQRKLNSYQVELNW
YQTYANSVSTHCPVPRCLYVEQRDNELILVLEDLATCGFPIVKTNASINEAKACLTWLANFHAEHMNVEPIGLWQTGTYW
HLDTRPDEFEALTDLPLKQAAVKIDETLKNTRYQTLVHGDAKLANFCFSEGGNQVAAVDFQYVGKGCGMKDVILFISSAV
MPEQCAELENELLDNYFSQLKASLLRLGRTEASDDIEQEWRPLFSVAWADFQRFVKGWSPEHWKINGYTEGLKERALKGL
>Mature_320_residues
MFDLSRISGFENASIRQTDTLQILWGGYGELVRLHLTQAPTSSIIIKQMTLPKPKVHPRGWNTDLSHQRKLNSYQVELNW
YQTYANSVSTHCPVPRCLYVEQRDNELILVLEDLATCGFPIVKTNASINEAKACLTWLANFHAEHMNVEPIGLWQTGTYW
HLDTRPDEFEALTDLPLKQAAVKIDETLKNTRYQTLVHGDAKLANFCFSEGGNQVAAVDFQYVGKGCGMKDVILFISSAV
MPEQCAELENELLDNYFSQLKASLLRLGRTEASDDIEQEWRPLFSVAWADFQRFVKGWSPEHWKINGYTEGLKERALKGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36458; Mature: 36458

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDLSRISGFENASIRQTDTLQILWGGYGELVRLHLTQAPTSSIIIKQMTLPKPKVHPRG
CCCCHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCC
WNTDLSHQRKLNSYQVELNWYQTYANSVSTHCPVPRCLYVEQRDNELILVLEDLATCGFP
CCCCCHHHHCCCCEEEEEEHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEHHHHCCCC
IVKTNASINEAKACLTWLANFHAEHMNVEPIGLWQTGTYWHLDTRPDEFEALTDLPLKQA
EEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCHHHHHHCCCHHHH
AVKIDETLKNTRYQTLVHGDAKLANFCFSEGGNQVAAVDFQYVGKGCGMKDVILFISSAV
HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEEEHEECCCCCCHHHHHHHHHHCC
MPEQCAELENELLDNYFSQLKASLLRLGRTEASDDIEQEWRPLFSVAWADFQRFVKGWSP
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
EHWKINGYTEGLKERALKGL
CCEEECCHHHHHHHHHHCCC
>Mature Secondary Structure
MFDLSRISGFENASIRQTDTLQILWGGYGELVRLHLTQAPTSSIIIKQMTLPKPKVHPRG
CCCCHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCC
WNTDLSHQRKLNSYQVELNWYQTYANSVSTHCPVPRCLYVEQRDNELILVLEDLATCGFP
CCCCCHHHHCCCCEEEEEEHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEHHHHCCCC
IVKTNASINEAKACLTWLANFHAEHMNVEPIGLWQTGTYWHLDTRPDEFEALTDLPLKQA
EEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCHHHHHHCCCHHHH
AVKIDETLKNTRYQTLVHGDAKLANFCFSEGGNQVAAVDFQYVGKGCGMKDVILFISSAV
HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEEEHEECCCCCCHHHHHHHHHHCC
MPEQCAELENELLDNYFSQLKASLLRLGRTEASDDIEQEWRPLFSVAWADFQRFVKGWSP
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
EHWKINGYTEGLKERALKGL
CCEEECCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA