Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694803

Identifier: 209694803

GI number: 209694803

Start: 1371953

End: 1372681

Strand: Direct

Name: 209694803

Synonym: VSAL_I1263

Alternate gene names: NA

Gene position: 1371953-1372681 (Clockwise)

Preceding gene: 209694802

Following gene: 209694805

Centisome position: 41.26

GC content: 40.6

Gene sequence:

>729_bases
ATGGAGCTTCCTCTAATGGATTTAGGTTTGTTGTTTGCGATGATTCTGATTTTTATCGGGTCATTTGTACAAAGTGCGAT
TGGTTTTGGTTTAGCGATTGTCACGGCACCTCTTTTATTTCTTATTTCGCCGAGTTACGTTCCTGCGCCTATTGTGATTG
TTGGTTTGTTTTTATCCATTATTAATGCGTATAAATACAAAGAAAATGTCTCTTTTCGTGGCTTAGGGTATGCATTTTTA
GGGCGAATTCCTGGATCGATTCTTGGAGGTTTGCTGCTTTATTATGTTGATGCAAAACTCTTGTCACTTTGGATCGGGGT
TGTCGTATTGCTTGCGGTTGTGGTGAGTTTATTGCCTTTTCGCATTGAGCCAAATAATTCAAGAATGACAATAGCTGGTT
TTTTCTCTGGTTTGTTCGGTACGAGTTCTGGTATTGGTGGTCCGCCAATGGCGTTGTTATTACAGCACCAAGAGGCGAAT
TTAATCCGCGCTAATTTATCTGCTTTCTTTGTTGTGAGTAGCCTTATATCGCTAGCGGTGCAAGTCCCTGCTGGTTATAT
GAGCATGTCGCATTTGTATCTTACTTTACCGTTATTGCCAGCGTCATATGTTGGTTATTTAGTCGCAATGAAAGTGGTGG
ATAGAATAGACAAAGAGACGATTAGAAACGTGTCTTTAGTGATGTGTTCGATCTCTGGTGTCGCAGCGATTGTGTTAGCG
TTAAGATAA

Upstream 100 bases:

>100_bases
AATAAATTCGAAAGGGTAAGCGTGTAATACTGCTGTTTCCTTTCTAACATCTAGTTCATAATGCCTTCTGATATTACTAT
CATAATAGAAGGCATTTTTT

Downstream 100 bases:

>100_bases
CGCTAACTTACCAATACCGTGACGTTTTCATTCTTTTGGTTAGAAAATCAATGAAGGCTCTCTGTAAAGGTGTTACTTGT
TTTCGTGTCGCGTAAATCGC

Product: membrane protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MELPLMDLGLLFAMILIFIGSFVQSAIGFGLAIVTAPLLFLISPSYVPAPIVIVGLFLSIINAYKYKENVSFRGLGYAFL
GRIPGSILGGLLLYYVDAKLLSLWIGVVVLLAVVVSLLPFRIEPNNSRMTIAGFFSGLFGTSSGIGGPPMALLLQHQEAN
LIRANLSAFFVVSSLISLAVQVPAGYMSMSHLYLTLPLLPASYVGYLVAMKVVDRIDKETIRNVSLVMCSISGVAAIVLA
LR

Sequences:

>Translated_242_residues
MELPLMDLGLLFAMILIFIGSFVQSAIGFGLAIVTAPLLFLISPSYVPAPIVIVGLFLSIINAYKYKENVSFRGLGYAFL
GRIPGSILGGLLLYYVDAKLLSLWIGVVVLLAVVVSLLPFRIEPNNSRMTIAGFFSGLFGTSSGIGGPPMALLLQHQEAN
LIRANLSAFFVVSSLISLAVQVPAGYMSMSHLYLTLPLLPASYVGYLVAMKVVDRIDKETIRNVSLVMCSISGVAAIVLA
LR
>Mature_242_residues
MELPLMDLGLLFAMILIFIGSFVQSAIGFGLAIVTAPLLFLISPSYVPAPIVIVGLFLSIINAYKYKENVSFRGLGYAFL
GRIPGSILGGLLLYYVDAKLLSLWIGVVVLLAVVVSLLPFRIEPNNSRMTIAGFFSGLFGTSSGIGGPPMALLLQHQEAN
LIRANLSAFFVVSSLISLAVQVPAGYMSMSHLYLTLPLLPASYVGYLVAMKVVDRIDKETIRNVSLVMCSISGVAAIVLA
LR

Specific function: Unknown

COG id: COG0730

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25945; Mature: 25945

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELPLMDLGLLFAMILIFIGSFVQSAIGFGLAIVTAPLLFLISPSYVPAPIVIVGLFLSI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
INAYKYKENVSFRGLGYAFLGRIPGSILGGLLLYYVDAKLLSLWIGVVVLLAVVVSLLPF
HHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RIEPNNSRMTIAGFFSGLFGTSSGIGGPPMALLLQHQEANLIRANLSAFFVVSSLISLAV
EECCCCCEEEHHHHHHHHHCCCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHH
QVPAGYMSMSHLYLTLPLLPASYVGYLVAMKVVDRIDKETIRNVSLVMCSISGVAAIVLA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LR
CC
>Mature Secondary Structure
MELPLMDLGLLFAMILIFIGSFVQSAIGFGLAIVTAPLLFLISPSYVPAPIVIVGLFLSI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
INAYKYKENVSFRGLGYAFLGRIPGSILGGLLLYYVDAKLLSLWIGVVVLLAVVVSLLPF
HHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RIEPNNSRMTIAGFFSGLFGTSSGIGGPPMALLLQHQEANLIRANLSAFFVVSSLISLAV
EECCCCCEEEHHHHHHHHHCCCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHH
QVPAGYMSMSHLYLTLPLLPASYVGYLVAMKVVDRIDKETIRNVSLVMCSISGVAAIVLA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA