| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is yaeQ [H]
Identifier: 209694802
GI number: 209694802
Start: 1371318
End: 1371857
Strand: Direct
Name: yaeQ [H]
Synonym: VSAL_I1262
Alternate gene names: 209694802
Gene position: 1371318-1371857 (Clockwise)
Preceding gene: 209694801
Following gene: 209694803
Centisome position: 41.24
GC content: 41.3
Gene sequence:
>540_bases GTGGCTATCAAACCAACCATCTACAAATTTCGTATCGCGTTAACAGACTTGAATCGTGATCATTATGATTCAGTAAGCTT AACCATTGCTCAGCACCCATCAGAAAGTGAAGAGCGTATGATGGCTCGTGTATTGGCATTTTGTTTGAATGCTGAAGAGC GTTTAACGTTTACGAAAGGATTGTCTGCGATTGATGAGCCGGATATTTGGGTTCGTGAATACGATGATACGATCTCTCTT TGGATTGATGCAGGTGAGCCTGATCCTGAGCGTATGAAAAAAGCGTCACGCCAGTCTAAAGTGACTAAGGTGTACAGCTT TAACTCAAAATCTGAAGTGTGGTGGAAGCAAAACCAAAGTAAATTCAAACAGTATCCTGTTGATGTGGTTCGTTTTGATT CTGTTCAAATACACTCATTTTCTGCATTGTTAGAAAGAACGATGGAAATGTCAGTGATGATCACAGGCGATTCAGCGTTT ATTTCAGCTGCGAAAGGTGACTGCGAAGTGACATGGGAAACCTTGCAATCGGTTGAATAA
Upstream 100 bases:
>100_bases TTAAGGCCTCGCAGGTACCACTGTGAGGTCTTTTTTTATGCCTAGCTAAGCAACAAGAATCGCGTACAATGCCTTCAATT CTCAATAGTTAGGAAAGCCA
Downstream 100 bases:
>100_bases ATTCGAAAGGGTAAGCGTGTAATACTGCTGTTTCCTTTCTAACATCTAGTTCATAATGCCTTCTGATATTACTATCATAA TAGAAGGCATTTTTTATGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MAIKPTIYKFRIALTDLNRDHYDSVSLTIAQHPSESEERMMARVLAFCLNAEERLTFTKGLSAIDEPDIWVREYDDTISL WIDAGEPDPERMKKASRQSKVTKVYSFNSKSEVWWKQNQSKFKQYPVDVVRFDSVQIHSFSALLERTMEMSVMITGDSAF ISAAKGDCEVTWETLQSVE
Sequences:
>Translated_179_residues MAIKPTIYKFRIALTDLNRDHYDSVSLTIAQHPSESEERMMARVLAFCLNAEERLTFTKGLSAIDEPDIWVREYDDTISL WIDAGEPDPERMKKASRQSKVTKVYSFNSKSEVWWKQNQSKFKQYPVDVVRFDSVQIHSFSALLERTMEMSVMITGDSAF ISAAKGDCEVTWETLQSVE >Mature_178_residues AIKPTIYKFRIALTDLNRDHYDSVSLTIAQHPSESEERMMARVLAFCLNAEERLTFTKGLSAIDEPDIWVREYDDTISLW IDAGEPDPERMKKASRQSKVTKVYSFNSKSEVWWKQNQSKFKQYPVDVVRFDSVQIHSFSALLERTMEMSVMITGDSAFI SAAKGDCEVTWETLQSVE
Specific function: Unknown
COG id: COG4681
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786388, Length=173, Percent_Identity=42.7745664739884, Blast_Score=145, Evalue=1e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009822 [H]
Pfam domain/function: PF07152 YaeQ [H]
EC number: NA
Molecular weight: Translated: 20645; Mature: 20513
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIKPTIYKFRIALTDLNRDHYDSVSLTIAQHPSESEERMMARVLAFCLNAEERLTFTKG CCCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCHHHEEHHHC LSAIDEPDIWVREYDDTISLWIDAGEPDPERMKKASRQSKVTKVYSFNSKSEVWWKQNQS CCCCCCCCCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHEEEEECCCCCCEEECCCHH KFKQYPVDVVRFDSVQIHSFSALLERTMEMSVMITGDSAFISAAKGDCEVTWETLQSVE HHHHCCCEEEEECCEEEHHHHHHHHHHHEEEEEEECCCCEEEECCCCCEEEHHHHHCCC >Mature Secondary Structure AIKPTIYKFRIALTDLNRDHYDSVSLTIAQHPSESEERMMARVLAFCLNAEERLTFTKG CCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCHHHEEHHHC LSAIDEPDIWVREYDDTISLWIDAGEPDPERMKKASRQSKVTKVYSFNSKSEVWWKQNQS CCCCCCCCCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHEEEEECCCCCCEEECCCHH KFKQYPVDVVRFDSVQIHSFSALLERTMEMSVMITGDSAFISAAKGDCEVTWETLQSVE HHHHCCCEEEEECCEEEHHHHHHHHHHHEEEEEEECCCCEEEECCCCCEEEHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]