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The map label for this gene is yhcS [C]

Identifier: 209694792

GI number: 209694792

Start: 1358066

End: 1358929

Strand: Direct

Name: yhcS [C]

Synonym: VSAL_I1250

Alternate gene names: 209694792

Gene position: 1358066-1358929 (Clockwise)

Preceding gene: 209694791

Following gene: 209694793

Centisome position: 40.84

GC content: 38.43

Gene sequence:

>864_bases
ATGAATTCCATATTTGGAACTATTGATGATCTGTTTTTGTTTTGTAAAGTAGTGCAACTGGGATCTCAACAAGCAGCCGC
AAAAGCATTGGGATTACCCGTTTCGACCGTCTCACGCCGTTTATCATTAATGGAAGAGAAGCTGAATGTTCGACTGTTAG
AGAAGAAAGGTCGAGAGCTTGTTCCGACTCAAACAGGTCAACATTACTATCAGTTATTAGAAGACCAATTTAATCTACTA
GAAAGTAACTGCCACCAATTGAGTGAACAGGTTGAAGAGGTTGTTGGAAATATTCGATTGTCTTTGCCTTATCGTTTTTA
CAATTTCTACGTTAGAGAATTAATTACTGATTTTTTATTAGAGTTCCCACAAACGTCAATTGAAATTAATTTATGCGCCG
AAGATGCGTTACCAAAAACAGACCGAGACTTAGTGCTTACGTTTGATATTAGCAGAGCAGAGGACATGATTGCTCGCCCT
CTATTCTTAGCTCAGCATGGTGTCTTTGTCGCAACGTCTTATTGGGATAAGCATAAAGTCGCTCAAATCGAAGAACTTGA
TTGGATTCGATTAGACGATCAAAAGACCATGACATATACCGATCAAACTCAAACATTAAAGCAGATCCACATTCACCCTC
GTTTGCAAGTGAATGATATTGGTCAAGTGCTTCATGCCACGGTGAAAGGGCTAGGTGCTGCAACATTACCTTATCATTTG
ATCATGCCTGAGATGGATCTTATCGAAATATTTTCCGATCATAAGTTCCCACCAAGACAATCTTTTTTGGTGTATAAACA
ACGAAAATTTCAACCTAAAGCATTAGCTATTTTAATTGAACGTCTCATTGCCACAATGCCTTAA

Upstream 100 bases:

>100_bases
CTCATCATCATCTCTCTATTTTTGATTGTTATCGTGATTGTTTGAATGAGATTAAGTATATTAATTTCATTAATGATGAA
AAATAGCGAGATATAAAAGT

Downstream 100 bases:

>100_bases
TTTTTGACATTATTCTGACTTTTCTTTGAGTTGTTTCGTCTTAGAGGTCACGAAATTATTCGTCAAAACGGATTAAAATA
AGTTCATAAATTAAGCATCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MNSIFGTIDDLFLFCKVVQLGSQQAAAKALGLPVSTVSRRLSLMEEKLNVRLLEKKGRELVPTQTGQHYYQLLEDQFNLL
ESNCHQLSEQVEEVVGNIRLSLPYRFYNFYVRELITDFLLEFPQTSIEINLCAEDALPKTDRDLVLTFDISRAEDMIARP
LFLAQHGVFVATSYWDKHKVAQIEELDWIRLDDQKTMTYTDQTQTLKQIHIHPRLQVNDIGQVLHATVKGLGAATLPYHL
IMPEMDLIEIFSDHKFPPRQSFLVYKQRKFQPKALAILIERLIATMP

Sequences:

>Translated_287_residues
MNSIFGTIDDLFLFCKVVQLGSQQAAAKALGLPVSTVSRRLSLMEEKLNVRLLEKKGRELVPTQTGQHYYQLLEDQFNLL
ESNCHQLSEQVEEVVGNIRLSLPYRFYNFYVRELITDFLLEFPQTSIEINLCAEDALPKTDRDLVLTFDISRAEDMIARP
LFLAQHGVFVATSYWDKHKVAQIEELDWIRLDDQKTMTYTDQTQTLKQIHIHPRLQVNDIGQVLHATVKGLGAATLPYHL
IMPEMDLIEIFSDHKFPPRQSFLVYKQRKFQPKALAILIERLIATMP
>Mature_287_residues
MNSIFGTIDDLFLFCKVVQLGSQQAAAKALGLPVSTVSRRLSLMEEKLNVRLLEKKGRELVPTQTGQHYYQLLEDQFNLL
ESNCHQLSEQVEEVVGNIRLSLPYRFYNFYVRELITDFLLEFPQTSIEINLCAEDALPKTDRDLVLTFDISRAEDMIARP
LFLAQHGVFVATSYWDKHKVAQIEELDWIRLDDQKTMTYTDQTQTLKQIHIHPRLQVNDIGQVLHATVKGLGAATLPYHL
IMPEMDLIEIFSDHKFPPRQSFLVYKQRKFQPKALAILIERLIATMP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=285, Percent_Identity=23.1578947368421, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI157672245, Length=277, Percent_Identity=23.1046931407942, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33161; Mature: 33161

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSIFGTIDDLFLFCKVVQLGSQQAAAKALGLPVSTVSRRLSLMEEKLNVRLLEKKGREL
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
VPTQTGQHYYQLLEDQFNLLESNCHQLSEQVEEVVGNIRLSLPYRFYNFYVRELITDFLL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHH
EFPQTSIEINLCAEDALPKTDRDLVLTFDISRAEDMIARPLFLAQHGVFVATSYWDKHKV
HCCCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEECCCCCHHH
AQIEELDWIRLDDQKTMTYTDQTQTLKQIHIHPRLQVNDIGQVLHATVKGLGAATLPYHL
HHHHCCCEEEECCCCCEEECHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCCHHCCHHE
IMPEMDLIEIFSDHKFPPRQSFLVYKQRKFQPKALAILIERLIATMP
ECCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNSIFGTIDDLFLFCKVVQLGSQQAAAKALGLPVSTVSRRLSLMEEKLNVRLLEKKGREL
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
VPTQTGQHYYQLLEDQFNLLESNCHQLSEQVEEVVGNIRLSLPYRFYNFYVRELITDFLL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHH
EFPQTSIEINLCAEDALPKTDRDLVLTFDISRAEDMIARPLFLAQHGVFVATSYWDKHKV
HCCCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEECCCCCHHH
AQIEELDWIRLDDQKTMTYTDQTQTLKQIHIHPRLQVNDIGQVLHATVKGLGAATLPYHL
HHHHCCCEEEECCCCCEEECHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCCHHCCHHE
IMPEMDLIEIFSDHKFPPRQSFLVYKQRKFQPKALAILIERLIATMP
ECCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]