| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209694791
Identifier: 209694791
GI number: 209694791
Start: 1357404
End: 1357871
Strand: Direct
Name: 209694791
Synonym: VSAL_I1249
Alternate gene names: NA
Gene position: 1357404-1357871 (Clockwise)
Preceding gene: 209694783
Following gene: 209694792
Centisome position: 40.82
GC content: 39.53
Gene sequence:
>468_bases ATGCGCTCAAAATTAGAACTGAGAGTTCCGCCCCCGTTAGTCATGTTGTTGTTTATGGCAACTGTGTTCGTTTTTGACTA CCTTGCTCCTTTTAACCTGTTTTACTTGCCTTGGTTGAGCTACGTTCTTGTTCTCAGTTTGATTACTTTAGGTGGGGGAA TTGCGTTGTGCGGAGTAAAAGAATTTCGAGAGGCAAAAACAACGGTTAATCCACTTAAACCAGAAAGCAGTTCTTCATTA GTGAGCTCTGGTATTTATCAATACACTCGTAATCCTATGTACCTTGGGCTACTACTGGCTTTGTTGAGTAGTGTTGCTTA TACCCAACATCCACTTGGTTTAGTGAGTGCGTTAGGTTTTGTTCTTTATATGAATCGTTTTCAAATTGAACCAGAAGAAA AAATGCTGGTTAAATTGTTTGGTGAGGACTTTAAAGTGTATGCCAATCAGGTGAAGCGTTGGTTTTAA
Upstream 100 bases:
>100_bases CTTGAATAATTAAGAAAAGGCCAGTGACATTGTAATCTTGACTGTTAAAGTAAGCGCTGGATCTATATGGACAGAGAATC ACCGTGTGAAAGGAGAACAA
Downstream 100 bases:
>100_bases TTAGGGGATATTCTCACTAGTATGGTGCGGTCTGGGTCTTATTCCTCTCATTCTAATTGCTGAAATGGTACCAGATACCC AGAATTGTGTTTTACTCATC
Product: membrane protein
Products: NA
Alternate protein names: ORF7 [H]
Number of amino acids: Translated: 155; Mature: 155
Protein sequence:
>155_residues MRSKLELRVPPPLVMLLFMATVFVFDYLAPFNLFYLPWLSYVLVLSLITLGGGIALCGVKEFREAKTTVNPLKPESSSSL VSSGIYQYTRNPMYLGLLLALLSSVAYTQHPLGLVSALGFVLYMNRFQIEPEEKMLVKLFGEDFKVYANQVKRWF
Sequences:
>Translated_155_residues MRSKLELRVPPPLVMLLFMATVFVFDYLAPFNLFYLPWLSYVLVLSLITLGGGIALCGVKEFREAKTTVNPLKPESSSSL VSSGIYQYTRNPMYLGLLLALLSSVAYTQHPLGLVSALGFVLYMNRFQIEPEEKMLVKLFGEDFKVYANQVKRWF >Mature_155_residues MRSKLELRVPPPLVMLLFMATVFVFDYLAPFNLFYLPWLSYVLVLSLITLGGGIALCGVKEFREAKTTVNPLKPESSSSL VSSGIYQYTRNPMYLGLLLALLSSVAYTQHPLGLVSALGFVLYMNRFQIEPEEKMLVKLFGEDFKVYANQVKRWF
Specific function: Unknown
COG id: COG2020
COG function: function code O; Putative protein-S-isoprenylcysteine methyltransferase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the isoprenylcysteine O-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007269 [H]
Pfam domain/function: PF04140 ICMT [H]
EC number: NA
Molecular weight: Translated: 17627; Mature: 17627
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSKLELRVPPPLVMLLFMATVFVFDYLAPFNLFYLPWLSYVLVLSLITLGGGIALCGVK CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH EFREAKTTVNPLKPESSSSLVSSGIYQYTRNPMYLGLLLALLSSVAYTQHPLGLVSALGF HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH VLYMNRFQIEPEEKMLVKLFGEDFKVYANQVKRWF HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRSKLELRVPPPLVMLLFMATVFVFDYLAPFNLFYLPWLSYVLVLSLITLGGGIALCGVK CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH EFREAKTTVNPLKPESSSSLVSSGIYQYTRNPMYLGLLLALLSSVAYTQHPLGLVSALGF HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH VLYMNRFQIEPEEKMLVKLFGEDFKVYANQVKRWF HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1655697 [H]