| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209694790
Identifier: 209694790
GI number: 209694790
Start: 1356686
End: 1357129
Strand: Reverse
Name: 209694790
Synonym: VSAL_I1248
Alternate gene names: NA
Gene position: 1357129-1356686 (Counterclockwise)
Preceding gene: 209694794
Following gene: 209694789
Centisome position: 40.81
GC content: 30.18
Gene sequence:
>444_bases ATGAATAATGAGAATTTAAAAAACTTACGTCTTAAAGATTTAGAAAAAATGATCAAATCACATCACTTTTGGCGATATTT AGTCGCAACTACCCTTGTTGTTTTTTGTATGGATTCATTATTACAACATCGTGATTATTTCGGATTCGTTGAATTTCGTC CCCTGTTTTTACTTATCACCTTCCCTTTGTTGTTCTTATCAATTAGAAATCATAATGATTCCGTTAAAACGGATGAAGAA AAGAGCAAGGATATAAAAAGATGGGAGATAAGAAATCTTGGCCGTTACGAATTCATTATTATTCTATTAATCATATTTCT CTTCGTTCCACTGACATTTTTTGGTCAATACACTGCTTTTGTGCATATATTTAAAGCGTCTTTAATTACCTTTGCGATTC AATGTCTTTTAAAGAAAAGCAATAACAAAGTGAATCAGAAATAA
Upstream 100 bases:
>100_bases CCCTTTACCTCAAAAAAACTCAATAAAACAATATCTTTTTTATACTTTTTTTGTATAATTTATTGATAATAGTTATCAAT CGTATTTAAGTGAAGTAAAA
Downstream 100 bases:
>100_bases TTCATCAATCTACGTACATTCCTCACTTTAAAAAAATGACTGCATTGTGATGTAAAACAATACCGTTATGGGTATTTATA TGTTTATATATACATGAAGC
Product: membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 147; Mature: 147
Protein sequence:
>147_residues MNNENLKNLRLKDLEKMIKSHHFWRYLVATTLVVFCMDSLLQHRDYFGFVEFRPLFLLITFPLLFLSIRNHNDSVKTDEE KSKDIKRWEIRNLGRYEFIIILLIIFLFVPLTFFGQYTAFVHIFKASLITFAIQCLLKKSNNKVNQK
Sequences:
>Translated_147_residues MNNENLKNLRLKDLEKMIKSHHFWRYLVATTLVVFCMDSLLQHRDYFGFVEFRPLFLLITFPLLFLSIRNHNDSVKTDEE KSKDIKRWEIRNLGRYEFIIILLIIFLFVPLTFFGQYTAFVHIFKASLITFAIQCLLKKSNNKVNQK >Mature_147_residues MNNENLKNLRLKDLEKMIKSHHFWRYLVATTLVVFCMDSLLQHRDYFGFVEFRPLFLLITFPLLFLSIRNHNDSVKTDEE KSKDIKRWEIRNLGRYEFIIILLIIFLFVPLTFFGQYTAFVHIFKASLITFAIQCLLKKSNNKVNQK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17665; Mature: 17665
Theoretical pI: Translated: 10.23; Mature: 10.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNENLKNLRLKDLEKMIKSHHFWRYLVATTLVVFCMDSLLQHRDYFGFVEFRPLFLLIT CCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH FPLLFLSIRNHNDSVKTDEEKSKDIKRWEIRNLGRYEFIIILLIIFLFVPLTFFGQYTAF HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VHIFKASLITFAIQCLLKKSNNKVNQK HHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MNNENLKNLRLKDLEKMIKSHHFWRYLVATTLVVFCMDSLLQHRDYFGFVEFRPLFLLIT CCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH FPLLFLSIRNHNDSVKTDEEKSKDIKRWEIRNLGRYEFIIILLIIFLFVPLTFFGQYTAF HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VHIFKASLITFAIQCLLKKSNNKVNQK HHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA