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The map label for this gene is ybfI [H]

Identifier: 209694757

GI number: 209694757

Start: 1321384

End: 1322226

Strand: Reverse

Name: ybfI [H]

Synonym: VSAL_I1212

Alternate gene names: 209694757

Gene position: 1322226-1321384 (Counterclockwise)

Preceding gene: 209694758

Following gene: 209694754

Centisome position: 39.76

GC content: 36.42

Gene sequence:

>843_bases
ATGGACGTTATATTGGCTAATTCAAAAACACATTTTTTACGATCATCCGTTCTTCCGTTTGAGTTACGTTATTCTGGTAA
TTCAAATGCCTGCTATAAAAAACACTCACATCGCGAATTTTCTATTGGTGTCGTAGATAGCGGCGTTAGTGAATACATAA
ATCAAAATTCAAAACAAGAAATCAGCATCGGCTCTACGGTCATTATCAATCCTGAAACCGTACATTCCTGTAATCCAAAA
TCGGGGACTAACTGGAGCTATAAAATGCTTTTTGTTGAGCTTGATTGGTTAATACAGTTACAAACAAGCATCACTGGTAA
AAAGCATAGTGAGTTTCATCCCTTTCAACAAAATCACAGCCGATGCCCTACTCTGTATCAGAATTTCCAATCATTAACGC
AAGTTCTAATTGAAAACGAATCGTCATTATTCGTGGAAGAATCCGCCATCACTTTCTTCTCTACTCTGTTTATTAATGAT
CTTAAAGCAATGCCGTCCCACAAGACCATTCCCAAACAAGCAACTCATCTCGCATATCAATACATCTCTGATAATGTTGA
TAAAAACATGTCTATCTCTGAGATAGCGAAAGAGTCTGGTTTGAGCGATTTTTATCTTATCCATTCATTTAAAAAACAAT
ACGGAATAACACCACATGCCTACCAAATGATGATGAAAATAAATAAAGCCAAAGACTTATTAAAAAAGGGAAATGATATT
GCGTCGATAGCCACAGATCTTGGCTTTACCGATCAAAGTCACTTTCATCGACACTTTAAAAGCATCGTTGCCGCGACACC
AAAGCAATATAAAATAGACAAGCACTCAACGTTTAATGATTAG

Upstream 100 bases:

>100_bases
GATATTTAGAGCACCCTGTTCATTATAAAATCTTTAATCGACTTATGGGATCATTGCTCGCATTAACCGTCGTTTATGTC
TTCTTTATATCAAATTAACA

Downstream 100 bases:

>100_bases
CTATCCACAATTTAGCTAAATCACACCAACCAAAACCGTTCATTCTTACCTCTTTTAGATTTTCAGAGGTGATGAGTTCA
AACGAATCTTTCTTAACGAT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MDVILANSKTHFLRSSVLPFELRYSGNSNACYKKHSHREFSIGVVDSGVSEYINQNSKQEISIGSTVIINPETVHSCNPK
SGTNWSYKMLFVELDWLIQLQTSITGKKHSEFHPFQQNHSRCPTLYQNFQSLTQVLIENESSLFVEESAITFFSTLFIND
LKAMPSHKTIPKQATHLAYQYISDNVDKNMSISEIAKESGLSDFYLIHSFKKQYGITPHAYQMMMKINKAKDLLKKGNDI
ASIATDLGFTDQSHFHRHFKSIVAATPKQYKIDKHSTFND

Sequences:

>Translated_280_residues
MDVILANSKTHFLRSSVLPFELRYSGNSNACYKKHSHREFSIGVVDSGVSEYINQNSKQEISIGSTVIINPETVHSCNPK
SGTNWSYKMLFVELDWLIQLQTSITGKKHSEFHPFQQNHSRCPTLYQNFQSLTQVLIENESSLFVEESAITFFSTLFIND
LKAMPSHKTIPKQATHLAYQYISDNVDKNMSISEIAKESGLSDFYLIHSFKKQYGITPHAYQMMMKINKAKDLLKKGNDI
ASIATDLGFTDQSHFHRHFKSIVAATPKQYKIDKHSTFND
>Mature_280_residues
MDVILANSKTHFLRSSVLPFELRYSGNSNACYKKHSHREFSIGVVDSGVSEYINQNSKQEISIGSTVIINPETVHSCNPK
SGTNWSYKMLFVELDWLIQLQTSITGKKHSEFHPFQQNHSRCPTLYQNFQSLTQVLIENESSLFVEESAITFFSTLFIND
LKAMPSHKTIPKQATHLAYQYISDNVDKNMSISEIAKESGLSDFYLIHSFKKQYGITPHAYQMMMKINKAKDLLKKGNDI
ASIATDLGFTDQSHFHRHFKSIVAATPKQYKIDKHSTFND

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=140, Percent_Identity=30.7142857142857, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31970; Mature: 31970

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVILANSKTHFLRSSVLPFELRYSGNSNACYKKHSHREFSIGVVDSGVSEYINQNSKQE
CCEEEECCCHHHHHHCCCCEEEEECCCCCCEECCCCCCEEEEEEECCCHHHHHCCCCCCE
ISIGSTVIINPETVHSCNPKSGTNWSYKMLFVELDWLIQLQTSITGKKHSEFHPFQQNHS
EECCCEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEHEEEEHHCCCCCCCCCCCCHHCCC
RCPTLYQNFQSLTQVLIENESSLFVEESAITFFSTLFINDLKAMPSHKTIPKQATHLAYQ
CCHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
YISDNVDKNMSISEIAKESGLSDFYLIHSFKKQYGITPHAYQMMMKINKAKDLLKKGNDI
HHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCH
ASIATDLGFTDQSHFHRHFKSIVAATPKQYKIDKHSTFND
HHHHHHCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCC
>Mature Secondary Structure
MDVILANSKTHFLRSSVLPFELRYSGNSNACYKKHSHREFSIGVVDSGVSEYINQNSKQE
CCEEEECCCHHHHHHCCCCEEEEECCCCCCEECCCCCCEEEEEEECCCHHHHHCCCCCCE
ISIGSTVIINPETVHSCNPKSGTNWSYKMLFVELDWLIQLQTSITGKKHSEFHPFQQNHS
EECCCEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEHEEEEHHCCCCCCCCCCCCHHCCC
RCPTLYQNFQSLTQVLIENESSLFVEESAITFFSTLFINDLKAMPSHKTIPKQATHLAYQ
CCHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
YISDNVDKNMSISEIAKESGLSDFYLIHSFKKQYGITPHAYQMMMKINKAKDLLKKGNDI
HHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCH
ASIATDLGFTDQSHFHRHFKSIVAATPKQYKIDKHSTFND
HHHHHHCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]