Click here to switch to the map view.

The map label for this gene is vasRB-1

Identifier: 209694720

GI number: 209694720

Start: 1276930

End: 1278291

Strand: Direct

Name: vasRB-1

Synonym: VSAL_I1173

Alternate gene names: NA

Gene position: 1276930-1278291 (Clockwise)

Preceding gene: 209694719

Following gene: 209694721

Centisome position: 38.4

GC content: 36.42

Gene sequence:

>1362_bases
ATGAATACAATCAATCAATCAATAACGATGCAATCAGAGTTAATATGCTTACCTTGGGAGGAATTATTATCACTCTCTCA
AAAAGGCAAAACTGCTCAATTTAAAGTATTGATTACTAAACTAATCGCTAATTTAGATCGTGTGATTAGCGAACAACTTT
CAACAGTTATGCAAGACAAACACTTTAAAAAACTGGAAGCAAGTTGGCTTGATCTTCAGTTATTGACAGAAAAACAAGTC
TCATCGCGAAGAGTTAAAGTTAAAATATTAGATCTAAGTTGGAGCATGGTGTCAGATGATCTAAATTACTCGTTTGAAAT
AAAGCAGACTGCTCTATTTAAAAGATTATACGCCAATGAATTTGATACTGGAGGTGGGACCCCTTTTGGTCTTGTTGTTA
TTGATCATAAAATTACGTCTGATTATGGTGAAGATGAAGACCATGATGACCTTTATACTTTGCAACTATTATCAGAGCTT
GCGGAGCGCTCGTTATGTCCAGTGGTGCTAGGGGTTGATGAGTTTTTCTTCGGTGATGATCCTAATCGCCAACTACATGA
TAACGTGAGAGTAAAACGAATTTTAGATAGTCGTGATTTTCTTTCATGGCAATTATTAAGAGATAAAGCCTCTTCTCGTT
TTTTGCATTTGGTTTTACCTGAGTATTTACAACGTCGTCCTTATCAAAATTATGCTGCGGGGTTTATTTTTACTGAAAGT
AATTATCGTGATAATGCGCTTTGGGGAAACAGTGCGTATTTACTTGCAGGAAATGTTATTCAAGAATTTGAACGCATTAG
TTGGTTTGGTTTTTTGCGTTCATATAATGAAACAGGTACATATGGAGCGATCATTCAACATGATTTATCACTTACCGCTA
AAGTTGATATTTATAATGAGGATGATGGTTTTTGGGCAGAACAAGGTTTTGTTCCACTAAGTAGTTTGTATTTAACGGAA
CAAAAAGGATTCTTTAGTAATCAATCGGTTTGGAAAGCATCAACAGAAGAACTCCAAATGTTGGGGACGTTACAAACTAA
CTTAATGGCATGTCGTTTCGGGCACTATATTAAAGCTCAGCTCCGAGATCAAATCGGCCGTTACGATAGCATGGAAGATT
GCAAACGTGGTTTAGAGAACTGGTTAAAATCTTATATTAGTGAAGTCGATTATGGTGAAGATTCAGTGATGGCTCGTTAT
CCATTAAAAGCGAGTGAAGTACGTATCAAAGAAGATAGCCAAGACAGCACTCGTTATTTATGCGAAATCATGCTTCAGCC
TCAGTATCAATATGAAATGATGGATGCTCAAGTATTATTAACAACTTCTATGCCTGATCAAGCAGTGGGAGGGTCTGCAT
GA

Upstream 100 bases:

>100_bases
ATGGAAGAATTAAGCACATCATTACGTATGGTTGCAAATATTCCTAGTTAATCATATTCGGGGGGGATCTCCCTCCGAAC
TGTTTTGAATTGGATAGTTA

Downstream 100 bases:

>100_bases
GCTTAATGGCGAAGTTAACTCAATCTTGGACTAATGATGTGGATGCGGTGCGTGATGCGATTATTGATAATATTTGTGAT
CTTATTTCAAGTCGAGCTCC

Product: type VI secretion protein VasRB-1

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MNTINQSITMQSELICLPWEELLSLSQKGKTAQFKVLITKLIANLDRVISEQLSTVMQDKHFKKLEASWLDLQLLTEKQV
SSRRVKVKILDLSWSMVSDDLNYSFEIKQTALFKRLYANEFDTGGGTPFGLVVIDHKITSDYGEDEDHDDLYTLQLLSEL
AERSLCPVVLGVDEFFFGDDPNRQLHDNVRVKRILDSRDFLSWQLLRDKASSRFLHLVLPEYLQRRPYQNYAAGFIFTES
NYRDNALWGNSAYLLAGNVIQEFERISWFGFLRSYNETGTYGAIIQHDLSLTAKVDIYNEDDGFWAEQGFVPLSSLYLTE
QKGFFSNQSVWKASTEELQMLGTLQTNLMACRFGHYIKAQLRDQIGRYDSMEDCKRGLENWLKSYISEVDYGEDSVMARY
PLKASEVRIKEDSQDSTRYLCEIMLQPQYQYEMMDAQVLLTTSMPDQAVGGSA

Sequences:

>Translated_453_residues
MNTINQSITMQSELICLPWEELLSLSQKGKTAQFKVLITKLIANLDRVISEQLSTVMQDKHFKKLEASWLDLQLLTEKQV
SSRRVKVKILDLSWSMVSDDLNYSFEIKQTALFKRLYANEFDTGGGTPFGLVVIDHKITSDYGEDEDHDDLYTLQLLSEL
AERSLCPVVLGVDEFFFGDDPNRQLHDNVRVKRILDSRDFLSWQLLRDKASSRFLHLVLPEYLQRRPYQNYAAGFIFTES
NYRDNALWGNSAYLLAGNVIQEFERISWFGFLRSYNETGTYGAIIQHDLSLTAKVDIYNEDDGFWAEQGFVPLSSLYLTE
QKGFFSNQSVWKASTEELQMLGTLQTNLMACRFGHYIKAQLRDQIGRYDSMEDCKRGLENWLKSYISEVDYGEDSVMARY
PLKASEVRIKEDSQDSTRYLCEIMLQPQYQYEMMDAQVLLTTSMPDQAVGGSA
>Mature_453_residues
MNTINQSITMQSELICLPWEELLSLSQKGKTAQFKVLITKLIANLDRVISEQLSTVMQDKHFKKLEASWLDLQLLTEKQV
SSRRVKVKILDLSWSMVSDDLNYSFEIKQTALFKRLYANEFDTGGGTPFGLVVIDHKITSDYGEDEDHDDLYTLQLLSEL
AERSLCPVVLGVDEFFFGDDPNRQLHDNVRVKRILDSRDFLSWQLLRDKASSRFLHLVLPEYLQRRPYQNYAAGFIFTES
NYRDNALWGNSAYLLAGNVIQEFERISWFGFLRSYNETGTYGAIIQHDLSLTAKVDIYNEDDGFWAEQGFVPLSSLYLTE
QKGFFSNQSVWKASTEELQMLGTLQTNLMACRFGHYIKAQLRDQIGRYDSMEDCKRGLENWLKSYISEVDYGEDSVMARY
PLKASEVRIKEDSQDSTRYLCEIMLQPQYQYEMMDAQVLLTTSMPDQAVGGSA

Specific function: Unknown

COG id: COG3517

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52288; Mature: 52288

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTINQSITMQSELICLPWEELLSLSQKGKTAQFKVLITKLIANLDRVISEQLSTVMQDK
CCCCCCCEEECCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFKKLEASWLDLQLLTEKQVSSRRVKVKILDLSWSMVSDDLNYSFEIKQTALFKRLYANE
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEHHHHHCCCCCEEEEHHHHHHHHHHHCC
FDTGGGTPFGLVVIDHKITSDYGEDEDHDDLYTLQLLSELAERSLCPVVLGVDEFFFGDD
CCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCHHHHCCCC
PNRQLHDNVRVKRILDSRDFLSWQLLRDKASSRFLHLVLPEYLQRRPYQNYAAGFIFTES
CCCHHHHCHHHHHHHCCCCHHHHHHHHHHHHCCEEEHHHHHHHHCCCCCCCCCEEEEECC
NYRDNALWGNSAYLLAGNVIQEFERISWFGFLRSYNETGTYGAIIQHDLSLTAKVDIYNE
CCCCCCEECCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCHHEEEECCEEEEEEEEEEC
DDGFWAEQGFVPLSSLYLTEQKGFFSNQSVWKASTEELQMLGTLQTNLMACRFGHYIKAQ
CCCCCCCCCCCCHHHEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRDQIGRYDSMEDCKRGLENWLKSYISEVDYGEDSVMARYPLKASEVRIKEDSQDSTRYL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEECCCCCHHHHHH
CEIMLQPQYQYEMMDAQVLLTTSMPDQAVGGSA
HHHHCCCCHHHHHCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MNTINQSITMQSELICLPWEELLSLSQKGKTAQFKVLITKLIANLDRVISEQLSTVMQDK
CCCCCCCEEECCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFKKLEASWLDLQLLTEKQVSSRRVKVKILDLSWSMVSDDLNYSFEIKQTALFKRLYANE
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEHHHHHCCCCCEEEEHHHHHHHHHHHCC
FDTGGGTPFGLVVIDHKITSDYGEDEDHDDLYTLQLLSELAERSLCPVVLGVDEFFFGDD
CCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCHHHHCCCC
PNRQLHDNVRVKRILDSRDFLSWQLLRDKASSRFLHLVLPEYLQRRPYQNYAAGFIFTES
CCCHHHHCHHHHHHHCCCCHHHHHHHHHHHHCCEEEHHHHHHHHCCCCCCCCCEEEEECC
NYRDNALWGNSAYLLAGNVIQEFERISWFGFLRSYNETGTYGAIIQHDLSLTAKVDIYNE
CCCCCCEECCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCHHEEEECCEEEEEEEEEEC
DDGFWAEQGFVPLSSLYLTEQKGFFSNQSVWKASTEELQMLGTLQTNLMACRFGHYIKAQ
CCCCCCCCCCCCHHHEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRDQIGRYDSMEDCKRGLENWLKSYISEVDYGEDSVMARYPLKASEVRIKEDSQDSTRYL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEECCCCCHHHHHH
CEIMLQPQYQYEMMDAQVLLTTSMPDQAVGGSA
HHHHCCCCHHHHHCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA