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The map label for this gene is vasF

Identifier: 209694666

GI number: 209694666

Start: 1213243

End: 1214070

Strand: Reverse

Name: vasF

Synonym: VSAL_I1114

Alternate gene names: NA

Gene position: 1214070-1213243 (Counterclockwise)

Preceding gene: 209694667

Following gene: 209694665

Centisome position: 36.51

GC content: 39.25

Gene sequence:

>828_bases
ATGAGCAGCATGGATGACCGCACGGTACTTATTACCCAAGATCCAAATCAAGTTAGCCCTACGTTAACTCAGAGCCCCAA
TGCCCCAAAGTTTGATCAATTACAAAATCGAATGGTGTATGCCGCTCGTATCAAACCTGAAGAGTACAACTTTGCTGGCA
ACAATCCACTGATTAGCGCCGCATCGTCTTTGCTTTGTATTACGTGTGATTTAAAGAAAGAAACGTATCAAGATATAGAT
CTACTCAAGCCTAAATTAGTCGAAGAAATTAAATCATTTGAATTCCAAGCTTTAAATTCAGGCGTTGAGAATAACTACGT
CGCACTATCCCGCTATTTACTGTGCTCTTTTATTGATGAAGTGGTTGTTACTACACCTTGGGGAGCCGAAAGCCACTGGG
CATCACAAAGTATGCTTAGTAGCTTTCACAATGAAACCTATGGCGGTGAGAAGTTTTTTCTGTTGCTTGAAAAGCTAAGT
CGAAATCCAGCTAAGTATTTAGAATTATTAGAGTTAATGTATTTATGCTTAAGCTTAGGTTTTGAAGGTAAATACCGCGT
TTTATCCCGAGGTTTAATTGAATTAGACGCCATTCGAGATTCTTTATACCGCCAAATTCGATCGTTACGTGGTGATGAGA
AATCAAGTCTTTCGCCAAATTGGGAGCCTAAACAAGTGCAACGACATAAGCTGACAAGACAAACATCATGGGTAGGCATT
GTCTGCGTAGTTCTGTTTTCTTTATGTGCTATCTATGGTGGTTTTTACTATGTATTAGACCAGCAATCAGCTCACGTTAT
TCAAGCATTTGAACACATTGAATTATAG

Upstream 100 bases:

>100_bases
GACCGATCTCAATTAACTCAATCAGGAGGTTTTGCGTTCCATATCGCTGGAGATTTTCCAGAACTGTCCCTCTTTTTTTG
GGCTATAAGGAATAAATAAT

Downstream 100 bases:

>100_bases
GATTGTCAGGGATGAAATCATTTTTTAACGCTTTATTAAATACGCTCAAGCAAACATGGTGTTGGTCTTTATTTATCGCC
TTATTTATTGCCCTTCTTTT

Product: type VI secretion protein VasF

Products: NA

Alternate protein names: OmpA Family Protein; Type VI Secretion System OmpA/MotB Family Protein; Outer Membrane Protein; DotU Family Type IV/VI Secretion System Protein; OmpA/MotB Domain-Containing Protein; OmpA/MotB Domain Protein; Type VI Secretion System Core Protein; OmpA/MotB; SciP Protein; Flagellar Motor Rotation Protein MotB; Replication/Virulence Associated Protein; Ompa/Motb Domain Protein; Type IV/VI Secretion System Protein; DotU Family Type IV / VI Secretion System Protein; Outer Membrane Porin Involved In Nitrogen Fixation; Type VI Secretion System Protein ImpK; OmpA-Family Protein; Type IV / VI Secretion System Protein; Type VI Secretion; Outer Membrane Protein Ompa/Motb Family; OmpA-Type Porin; OmpA-Like Porin; T6ss U; Flagellar Motor Protein; OmpA/MotB-Family Outer Membrane Protein; Type IV / VI Secretion System Family Protein DotU; Type VI Secretion System VasF

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MSSMDDRTVLITQDPNQVSPTLTQSPNAPKFDQLQNRMVYAARIKPEEYNFAGNNPLISAASSLLCITCDLKKETYQDID
LLKPKLVEEIKSFEFQALNSGVENNYVALSRYLLCSFIDEVVVTTPWGAESHWASQSMLSSFHNETYGGEKFFLLLEKLS
RNPAKYLELLELMYLCLSLGFEGKYRVLSRGLIELDAIRDSLYRQIRSLRGDEKSSLSPNWEPKQVQRHKLTRQTSWVGI
VCVVLFSLCAIYGGFYYVLDQQSAHVIQAFEHIEL

Sequences:

>Translated_275_residues
MSSMDDRTVLITQDPNQVSPTLTQSPNAPKFDQLQNRMVYAARIKPEEYNFAGNNPLISAASSLLCITCDLKKETYQDID
LLKPKLVEEIKSFEFQALNSGVENNYVALSRYLLCSFIDEVVVTTPWGAESHWASQSMLSSFHNETYGGEKFFLLLEKLS
RNPAKYLELLELMYLCLSLGFEGKYRVLSRGLIELDAIRDSLYRQIRSLRGDEKSSLSPNWEPKQVQRHKLTRQTSWVGI
VCVVLFSLCAIYGGFYYVLDQQSAHVIQAFEHIEL
>Mature_274_residues
SSMDDRTVLITQDPNQVSPTLTQSPNAPKFDQLQNRMVYAARIKPEEYNFAGNNPLISAASSLLCITCDLKKETYQDIDL
LKPKLVEEIKSFEFQALNSGVENNYVALSRYLLCSFIDEVVVTTPWGAESHWASQSMLSSFHNETYGGEKFFLLLEKLSR
NPAKYLELLELMYLCLSLGFEGKYRVLSRGLIELDAIRDSLYRQIRSLRGDEKSSLSPNWEPKQVQRHKLTRQTSWVGIV
CVVLFSLCAIYGGFYYVLDQQSAHVIQAFEHIEL

Specific function: Unknown

COG id: COG3455

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31429; Mature: 31298

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSMDDRTVLITQDPNQVSPTLTQSPNAPKFDQLQNRMVYAARIKPEEYNFAGNNPLISA
CCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHEEEEEEECCCCCCCCCCCCHHHH
ASSLLCITCDLKKETYQDIDLLKPKLVEEIKSFEFQALNSGVENNYVALSRYLLCSFIDE
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
VVVTTPWGAESHWASQSMLSSFHNETYGGEKFFLLLEKLSRNPAKYLELLELMYLCLSLG
HHEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
FEGKYRVLSRGLIELDAIRDSLYRQIRSLRGDEKSSLSPNWEPKQVQRHKLTRQTSWVGI
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VCVVLFSLCAIYGGFYYVLDQQSAHVIQAFEHIEL
HHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCC
>Mature Secondary Structure 
SSMDDRTVLITQDPNQVSPTLTQSPNAPKFDQLQNRMVYAARIKPEEYNFAGNNPLISA
CCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHEEEEEEECCCCCCCCCCCCHHHH
ASSLLCITCDLKKETYQDIDLLKPKLVEEIKSFEFQALNSGVENNYVALSRYLLCSFIDE
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
VVVTTPWGAESHWASQSMLSSFHNETYGGEKFFLLLEKLSRNPAKYLELLELMYLCLSLG
HHEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
FEGKYRVLSRGLIELDAIRDSLYRQIRSLRGDEKSSLSPNWEPKQVQRHKLTRQTSWVGI
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VCVVLFSLCAIYGGFYYVLDQQSAHVIQAFEHIEL
HHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA