Click here to switch to the map view.

The map label for this gene is yqhD [H]

Identifier: 209694652

GI number: 209694652

Start: 1189612

End: 1190760

Strand: Reverse

Name: yqhD [H]

Synonym: VSAL_I1094

Alternate gene names: 209694652

Gene position: 1190760-1189612 (Counterclockwise)

Preceding gene: 209694655

Following gene: 209694649

Centisome position: 35.81

GC content: 42.38

Gene sequence:

>1149_bases
ATGAAATTTTCTTATGTTAATCCTACCCAAATTCATTTTGGCCAAGGTCAAATCGCTGCCATCGCAACATCTATCCCACA
AGATAAAAAAGTATTAGTCATTTATGGCGGCGGCTCTATCAAGAACAATGGCGTTTACGACCAAGTTGTTGCCGCTTTAG
TTGACCACTCTTGGATTGAGTTTTCAGGCGTTGAGCCTAACCCAACGGTTGAGACATTAGATAACGCCGTTGCTATCGCA
AAAGCAGAAAAGATTGATTACATTCTGGCGGTTGGTGGTGGTTCAGTTATCGACGGTTCTAAATACGTTGCCGCTGCAGC
AAAATACGATGGCAATGGTTGGGATATTCTGATCGGTAAACACACCGTGACAGAAGCAATTCCACTGGGGGCTATTCTAA
CGCTACCAGCGACAGGTTCTGAATCTAACTCTGGTTCAGTTATTACACAAAAATCAACTCAAACAAAACTGCCTTTCATG
GCAGCAGCAGTACAGCCTAAATTTGCGGTACTTGATCCTGATTCAATGAAGACGCTACCTGAACGTCAATTAATCAATGG
ATTAGTCGATGCATGGGTTCATACTTGTGAGCAATACCTAACAATGCCAATCGGTGCAATGGTTCAAGACGGTTATGCTG
AAACCTTACTTCGTAACCTACTGACTCTTGGCGCTCAATACAATAACCGTGATAATAACGAGTGGCGTTCAAACCTAATG
TGGACAGCTAACCAAGCATTAAACGGCTTAATTGGTTCTGGTGTTCCACATGACTGGGCAACACACATGATCGGTCATGA
ACTAACGGCTCTGTATCACGTTGATCACGCTCGTTCTCTTTCTATCATTCAACCGTCTTTACTTCGTAACCAAATTGAAG
CGAAACGAGCAAAATTAGAGCAAATGGGTAAAAACGTATTTGGCCTAGAAGCGTCTGATGATTTAGCAGAACGTACAATT
ATTGCAATTGAAACCTTCTACCATAGCCTAAACTCACCAACTGAGTTAACAGAGCACGGTGATGATAAAGCATCAGCAAT
TGATACCATCATCAAACAACTTGAAGCTCATGGCATGGTTGCTTTAGGTGAGAACCAAGCAATTACTCTTGATGTATCTC
GTGCAATTCTTGAAGATGCGGTGAAGTAG

Upstream 100 bases:

>100_bases
CCTTTCTAAAGTTACAGTTCAAGACTAATATACACTTATTGAAATAATAAGCTTTGTAAAAAACAGGGCATTCTTCTTTT
GGAACCAATGAGGTACAGCA

Downstream 100 bases:

>100_bases
TTTTTACAACTGACTTAGCATCAACATAAAAAAGCCGGTTCAACTTAACAATACGGTTAGTTGAATCGGCTTTTCTCGTT
GTTAACCTCAGCAAACGTAT

Product: iron-containing alcohol dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MKFSYVNPTQIHFGQGQIAAIATSIPQDKKVLVIYGGGSIKNNGVYDQVVAALVDHSWIEFSGVEPNPTVETLDNAVAIA
KAEKIDYILAVGGGSVIDGSKYVAAAAKYDGNGWDILIGKHTVTEAIPLGAILTLPATGSESNSGSVITQKSTQTKLPFM
AAAVQPKFAVLDPDSMKTLPERQLINGLVDAWVHTCEQYLTMPIGAMVQDGYAETLLRNLLTLGAQYNNRDNNEWRSNLM
WTANQALNGLIGSGVPHDWATHMIGHELTALYHVDHARSLSIIQPSLLRNQIEAKRAKLEQMGKNVFGLEASDDLAERTI
IAIETFYHSLNSPTELTEHGDDKASAIDTIIKQLEAHGMVALGENQAITLDVSRAILEDAVK

Sequences:

>Translated_382_residues
MKFSYVNPTQIHFGQGQIAAIATSIPQDKKVLVIYGGGSIKNNGVYDQVVAALVDHSWIEFSGVEPNPTVETLDNAVAIA
KAEKIDYILAVGGGSVIDGSKYVAAAAKYDGNGWDILIGKHTVTEAIPLGAILTLPATGSESNSGSVITQKSTQTKLPFM
AAAVQPKFAVLDPDSMKTLPERQLINGLVDAWVHTCEQYLTMPIGAMVQDGYAETLLRNLLTLGAQYNNRDNNEWRSNLM
WTANQALNGLIGSGVPHDWATHMIGHELTALYHVDHARSLSIIQPSLLRNQIEAKRAKLEQMGKNVFGLEASDDLAERTI
IAIETFYHSLNSPTELTEHGDDKASAIDTIIKQLEAHGMVALGENQAITLDVSRAILEDAVK
>Mature_382_residues
MKFSYVNPTQIHFGQGQIAAIATSIPQDKKVLVIYGGGSIKNNGVYDQVVAALVDHSWIEFSGVEPNPTVETLDNAVAIA
KAEKIDYILAVGGGSVIDGSKYVAAAAKYDGNGWDILIGKHTVTEAIPLGAILTLPATGSESNSGSVITQKSTQTKLPFM
AAAVQPKFAVLDPDSMKTLPERQLINGLVDAWVHTCEQYLTMPIGAMVQDGYAETLLRNLLTLGAQYNNRDNNEWRSNLM
WTANQALNGLIGSGVPHDWATHMIGHELTALYHVDHARSLSIIQPSLLRNQIEAKRAKLEQMGKNVFGLEASDDLAERTI
IAIETFYHSLNSPTELTEHGDDKASAIDTIIKQLEAHGMVALGENQAITLDVSRAILEDAVK

Specific function: NADP-dependent ADH activity [H]

COG id: COG1979

COG function: function code C; Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1789386, Length=386, Percent_Identity=51.8134715025907, Blast_Score=379, Evalue=1e-106,
Organism=Escherichia coli, GI1787493, Length=387, Percent_Identity=23.7726098191214, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI48994951, Length=285, Percent_Identity=24.2105263157895, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1789163, Length=352, Percent_Identity=24.4318181818182, Blast_Score=69, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17537053, Length=209, Percent_Identity=29.1866028708134, Blast_Score=73, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321181, Length=340, Percent_Identity=24.1176470588235, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001670
- InterPro:   IPR018211 [H]

Pfam domain/function: PF00465 Fe-ADH [H]

EC number: 1.1.-.- [C]

Molecular weight: Translated: 41309; Mature: 41309

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFSYVNPTQIHFGQGQIAAIATSIPQDKKVLVIYGGGSIKNNGVYDQVVAALVDHSWIE
CCCCCCCCCEEEECCCCEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEE
FSGVEPNPTVETLDNAVAIAKAEKIDYILAVGGGSVIDGSKYVAAAAKYDGNGWDILIGK
ECCCCCCCHHHHHHHHHHHEECCCCCEEEEECCCCEECCCCEEEEEEEECCCCEEEEEEC
HTVTEAIPLGAILTLPATGSESNSGSVITQKSTQTKLPFMAAAVQPKFAVLDPDSMKTLP
HHHHHHCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHCCCCEEEECCHHHHHCC
ERQLINGLVDAWVHTCEQYLTMPIGAMVQDGYAETLLRNLLTLGAQYNNRDNNEWRSNLM
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHCEE
WTANQALNGLIGSGVPHDWATHMIGHELTALYHVDHARSLSIIQPSLLRNQIEAKRAKLE
EEHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEECCCCCHHHCCHHHHHHHHHHHHHHHH
QMGKNVFGLEASDDLAERTIIAIETFYHSLNSPTELTEHGDDKASAIDTIIKQLEAHGMV
HHCCCEECCCCCCHHHHHHEEHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHCCEE
ALGENQAITLDVSRAILEDAVK
EECCCCEEEEEHHHHHHHHHCC
>Mature Secondary Structure
MKFSYVNPTQIHFGQGQIAAIATSIPQDKKVLVIYGGGSIKNNGVYDQVVAALVDHSWIE
CCCCCCCCCEEEECCCCEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEE
FSGVEPNPTVETLDNAVAIAKAEKIDYILAVGGGSVIDGSKYVAAAAKYDGNGWDILIGK
ECCCCCCCHHHHHHHHHHHEECCCCCEEEEECCCCEECCCCEEEEEEEECCCCEEEEEEC
HTVTEAIPLGAILTLPATGSESNSGSVITQKSTQTKLPFMAAAVQPKFAVLDPDSMKTLP
HHHHHHCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHCCCCEEEECCHHHHHCC
ERQLINGLVDAWVHTCEQYLTMPIGAMVQDGYAETLLRNLLTLGAQYNNRDNNEWRSNLM
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHCEE
WTANQALNGLIGSGVPHDWATHMIGHELTALYHVDHARSLSIIQPSLLRNQIEAKRAKLE
EEHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEECCCCCHHHCCHHHHHHHHHHHHHHHH
QMGKNVFGLEASDDLAERTIIAIETFYHSLNSPTELTEHGDDKASAIDTIIKQLEAHGMV
HHCCCEECCCCCCHHHHHHEEHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHCCEE
ALGENQAITLDVSRAILEDAVK
EECCCCEEEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]