Click here to switch to the map view.

The map label for this gene is ybaB [C]

Identifier: 209694645

GI number: 209694645

Start: 1182334

End: 1182669

Strand: Direct

Name: ybaB [C]

Synonym: VSAL_I1086

Alternate gene names: 209694645

Gene position: 1182334-1182669 (Clockwise)

Preceding gene: 209694644

Following gene: 209694646

Centisome position: 35.56

GC content: 41.96

Gene sequence:

>336_bases
ATGTTCGGTGGAAAAGGCGGCATGGGCAACTTAATGAAGCAAGCCCAGCAAATGCAAGATCGCATGCAGAAAATGCAAGA
AGAAATTGGAAACATGGAAATCACTGGTGAATCTGGTGCTGGCCTTGTTAAAGTAACAATCACTGGTTCTCACAGTGTTC
GTCGTGTTGAAATTGATCCAAGCTTAATGGAAGAAGACGAAAAAGAAATGCTAGAAGATTTGATCGCAGCAGCGTTCAAT
GATGCATCTCGTCGTATTGAAGAAACACAAAAAGAAAGAATGGCGGGTGTAACTGGTGGAATGCAAATGCCACCAGGATT
TAAAATGCCATTCTAA

Upstream 100 bases:

>100_bases
AGACCAATTTAAAGAAAGATAAGGTAAGAATGGGTTGAAATTCTACATATCATCCCCATTTTTGTAGTATTAAAGATATA
AACACTAAGAGAGAATGAAT

Downstream 100 bases:

>100_bases
TTTATCTTAATTGATAAAAACTAAGATGAATAACGCATTATTTATCTTAGGGTAATTAGGCGGCTCATAGCTGCCTTTTT
CTATTTAGGAATATAAGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MFGGKGGMGNLMKQAQQMQDRMQKMQEEIGNMEITGESGAGLVKVTITGSHSVRRVEIDPSLMEEDEKEMLEDLIAAAFN
DASRRIEETQKERMAGVTGGMQMPPGFKMPF

Sequences:

>Translated_111_residues
MFGGKGGMGNLMKQAQQMQDRMQKMQEEIGNMEITGESGAGLVKVTITGSHSVRRVEIDPSLMEEDEKEMLEDLIAAAFN
DASRRIEETQKERMAGVTGGMQMPPGFKMPF
>Mature_111_residues
MFGGKGGMGNLMKQAQQMQDRMQKMQEEIGNMEITGESGAGLVKVTITGSHSVRRVEIDPSLMEEDEKEMLEDLIAAAFN
DASRRIEETQKERMAGVTGGMQMPPGFKMPF

Specific function: Unknown

COG id: COG0718

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0133 family

Homologues:

Organism=Escherichia coli, GI1786677, Length=111, Percent_Identity=80.1801801801802, Blast_Score=184, Evalue=1e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1086_ALISL (B6EJ43)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002262573.1
- ProteinModelPortal:   B6EJ43
- GeneID:   6988421
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I1086
- HOGENOM:   HBG734215
- OMA:   MLQDLIL
- ProtClustDB:   PRK00153
- HAMAP:   MF_00274
- InterPro:   IPR004401
- Gene3D:   G3DSA:3.30.1310.10
- PIRSF:   PIRSF004555
- TIGRFAMs:   TIGR00103

Pfam domain/function: PF02575 DUF149; SSF82607 CHP00103

EC number: NA

Molecular weight: Translated: 12271; Mature: 12271

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
11.7 %Met     (Translated Protein)
11.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
11.7 %Met     (Mature Protein)
11.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGGKGGMGNLMKQAQQMQDRMQKMQEEIGNMEITGESGAGLVKVTITGSHSVRRVEIDP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEECCCCEEEEECCH
SLMEEDEKEMLEDLIAAAFNDASRRIEETQKERMAGVTGGMQMPPGFKMPF
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFGGKGGMGNLMKQAQQMQDRMQKMQEEIGNMEITGESGAGLVKVTITGSHSVRRVEIDP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEEEECCCCEEEEECCH
SLMEEDEKEMLEDLIAAAFNDASRRIEETQKERMAGVTGGMQMPPGFKMPF
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA