Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694608

Identifier: 209694608

GI number: 209694608

Start: 1140397

End: 1140945

Strand: Direct

Name: 209694608

Synonym: VSAL_I1048

Alternate gene names: NA

Gene position: 1140397-1140945 (Clockwise)

Preceding gene: 209694607

Following gene: 209694609

Centisome position: 34.3

GC content: 43.17

Gene sequence:

>549_bases
ATGACCCAACTTGCCCTTGATGCTGAGATCATTCCGCTAAAATCACCAAGAATAAATCTGAGCTTAGAATTAAAAGCCGA
AGACATGAGTGGCCAAACATCAGGAACGGACGCAAGCGAGCAGGGTGATAAAGGCATGGTGCTTTCAGTCAGTGGATTAA
TTCCATTCAAAGAAAGTAAAACCTTAAAACGTTTGATGGTGCTATCTCGCCAAAAAGAAGACGGTAAACGCAAAATCTAT
CGTATTGGTAATGAGCTGGCCAAAAGCATGACCATTCGGCAGGTGCGATTCATGGGCCGAGTTACTGCCGATGAACAAGA
AAACCTAATGGCATGGAAAGTGAGCTTTCAACTGCGTGAGCATTTATCAGTATCAGAAGTAAAAGAGCAACGAGAAAACG
AAAAAGAGAAACAAGTTCAAACAGATAGCACAGAGAATACTGCAGCAGTGAAACCTAAAGCGCATGCGGCAGTCAGTAAC
ACGACAGATCAATCACAACCGACTCGATTTGAAGACGCATTACTGCAAAAAGAAAGGCAACTGGCATGA

Upstream 100 bases:

>100_bases
TGCTTAAAGAATCACAAGCACCAAGCCATGCCAACAGTTATACCTTTAGCGCACTCTTTTTAAGCACTGAGCCATTAACC
TTTTTAACGGAGTTATTCGC

Downstream 100 bases:

>100_bases
AGCTAAATAAACGAATTTTCATTAACGGTGAACAAAGAAAGCTAGTATCAGAGCAAGTGATCTTAGAATTATCTGCAGGT
GGCCGAGCAACGTTTGTGAT

Product: phage protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MTQLALDAEIIPLKSPRINLSLELKAEDMSGQTSGTDASEQGDKGMVLSVSGLIPFKESKTLKRLMVLSRQKEDGKRKIY
RIGNELAKSMTIRQVRFMGRVTADEQENLMAWKVSFQLREHLSVSEVKEQRENEKEKQVQTDSTENTAAVKPKAHAAVSN
TTDQSQPTRFEDALLQKERQLA

Sequences:

>Translated_182_residues
MTQLALDAEIIPLKSPRINLSLELKAEDMSGQTSGTDASEQGDKGMVLSVSGLIPFKESKTLKRLMVLSRQKEDGKRKIY
RIGNELAKSMTIRQVRFMGRVTADEQENLMAWKVSFQLREHLSVSEVKEQRENEKEKQVQTDSTENTAAVKPKAHAAVSN
TTDQSQPTRFEDALLQKERQLA
>Mature_181_residues
TQLALDAEIIPLKSPRINLSLELKAEDMSGQTSGTDASEQGDKGMVLSVSGLIPFKESKTLKRLMVLSRQKEDGKRKIYR
IGNELAKSMTIRQVRFMGRVTADEQENLMAWKVSFQLREHLSVSEVKEQRENEKEKQVQTDSTENTAAVKPKAHAAVSNT
TDQSQPTRFEDALLQKERQLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20504; Mature: 20372

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLALDAEIIPLKSPRINLSLELKAEDMSGQTSGTDASEQGDKGMVLSVSGLIPFKESK
CCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHH
TLKRLMVLSRQKEDGKRKIYRIGNELAKSMTIRQVRFMGRVTADEQENLMAWKVSFQLRE
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHH
HLSVSEVKEQRENEKEKQVQTDSTENTAAVKPKAHAAVSNTTDQSQPTRFEDALLQKERQ
CCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC
LA
CC
>Mature Secondary Structure 
TQLALDAEIIPLKSPRINLSLELKAEDMSGQTSGTDASEQGDKGMVLSVSGLIPFKESK
CCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHH
TLKRLMVLSRQKEDGKRKIYRIGNELAKSMTIRQVRFMGRVTADEQENLMAWKVSFQLRE
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHH
HLSVSEVKEQRENEKEKQVQTDSTENTAAVKPKAHAAVSNTTDQSQPTRFEDALLQKERQ
CCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC
LA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA