Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694609

Identifier: 209694609

GI number: 209694609

Start: 1140942

End: 1142567

Strand: Direct

Name: 209694609

Synonym: VSAL_I1049

Alternate gene names: NA

Gene position: 1140942-1142567 (Clockwise)

Preceding gene: 209694608

Following gene: 209694610

Centisome position: 34.31

GC content: 42.56

Gene sequence:

>1626_bases
ATGAAGCTAAATAAACGAATTTTCATTAACGGTGAACAAAGAAAGCTAGTATCAGAGCAAGTGATCTTAGAATTATCTGC
AGGTGGCCGAGCAACGTTTGTGATTGAAGGCGAAGTAAAAGAAAGCCAATTGGTTGAACTTCAAATAGGGTATCAAGACG
ATTACAAAGCCTACTTTGATGGATTCATCACCAAAGCTCAACCAGCTCAAAATGGCTTTACTCGTTTTATTGCTCGTGAG
CGTTCAGGGTTACTGGCTGCACGTTGGCCTATCAGTATTCAGCACCCAACCGTATCAGAAGTGATTGAACAACTCAGCTT
TGAAACGGGTCTAAAGTTCGTTCTACCAGAGCAAGATTACATTTATAACCGCATTCCTAATTTCACTTCCCAGGGAACGG
GTTATCAATTACTAAACAACTTAGGTCGAGCGTTTTCAATTCCTGATTTCTGTTGGTATCAACAAACTGACAGCACCATT
TATTTAGGTAGCTTTGCAGATAGTCGATGGCAATCAAGACCGGTCCCATTAGAAACCGAGCTATCCAAAAAACAACGCGG
CGGTGAAAGCATGACACTGGCAGTGATCCCCTCGGTTCGTCCTGGTGCCATCATCAACCAAAAACGCATTACTGAAGTGC
ATTTTGAAAAAGATGAAATGACACTGTATTGGAAAACGGAATCAGCAGAGAAACGGAAAATGAATTATCTGTTTCCAGAG
CTGGCTGCAGGGCATCATTTACCACGCTTTGCCCGAGTGGAAGCAGTCACCGACCAATCCATAGCAGGCCATGAAAATAA
CCCATACCGTCCTCGTTATGCGGTTGATGTTCAATTGCTTACAGAGCATGGTGAAGTCGATTCATTAGTGCCAATTTATA
AGGCCGTTCCTTTACCAACTGTGATTGGTGGTGCAGAGCAAGGGCAATTTGCCACGCCTAGTGAAGGGACTATTGTCGAG
ATTGCGTTTGCTTATGGTCGAAGTGATAAACCGTTTATTAGAACCATTTTAGGTGATGGTTGGTCATTGCCAGAATTAGA
GCCTGATGAACAACTGCAACAGCAACGCCATGAGGTATTCAATAAAACCGATGGAGCAGGCAATACCACCAACAGCACTG
ACCAAATCAAACACACTCAAGCGTTTGAACATTTACATGAAGTGGATAAATACCTCGGTGATTTTGGTGTGCATGAGCTG
AATGTACAACAGCACAGCAAAGAGACTATTGCAGGCCAAAAGCTCATTGAGACATTAGGCGCGTTTGAAGTGATGGCAGG
TGACGATGTAACGTTAGGCTCATTATCAAACTTACACCTGGTTAATGGTGGTAACCAAACTCAAATTATCGGCCAGTTAC
GAGATATTGTGATCGGCCTGAATGATAAACTCAGTGTTCTTGGTGAGCGAATACATACCATTGAGAAAGGGGATACTTTA
ATTGTAAACGGTAAACAGACCATTACCATTTCAAAAGACCAAATCATTAATGCAATGAACATCACTCAAGATGCTAAAAC
GATAAAGCTAAACGGTGGAGCAGGGGTTATCACTTGTGAAAGTATCTGTCCGTTTACAGGTAAATCCCATGTGGATGGCT
CAACCACTGTATTTGCAGGTAAGTAA

Upstream 100 bases:

>100_bases
CAGTGAAACCTAAAGCGCATGCGGCAGTCAGTAACACGACAGATCAATCACAACCGACTCGATTTGAAGACGCATTACTG
CAAAAAGAAAGGCAACTGGC

Downstream 100 bases:

>100_bases
TATGGCATTAGATAAAGGCTCATTAAAAGCCAAAATAGTAAAAGAGATGCAAGGTAAAGGCATGGTGACAGAAGGTGAGT
TTGCGAAAGCGGCAGATTTA

Product: phage protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MKLNKRIFINGEQRKLVSEQVILELSAGGRATFVIEGEVKESQLVELQIGYQDDYKAYFDGFITKAQPAQNGFTRFIARE
RSGLLAARWPISIQHPTVSEVIEQLSFETGLKFVLPEQDYIYNRIPNFTSQGTGYQLLNNLGRAFSIPDFCWYQQTDSTI
YLGSFADSRWQSRPVPLETELSKKQRGGESMTLAVIPSVRPGAIINQKRITEVHFEKDEMTLYWKTESAEKRKMNYLFPE
LAAGHHLPRFARVEAVTDQSIAGHENNPYRPRYAVDVQLLTEHGEVDSLVPIYKAVPLPTVIGGAEQGQFATPSEGTIVE
IAFAYGRSDKPFIRTILGDGWSLPELEPDEQLQQQRHEVFNKTDGAGNTTNSTDQIKHTQAFEHLHEVDKYLGDFGVHEL
NVQQHSKETIAGQKLIETLGAFEVMAGDDVTLGSLSNLHLVNGGNQTQIIGQLRDIVIGLNDKLSVLGERIHTIEKGDTL
IVNGKQTITISKDQIINAMNITQDAKTIKLNGGAGVITCESICPFTGKSHVDGSTTVFAGK

Sequences:

>Translated_541_residues
MKLNKRIFINGEQRKLVSEQVILELSAGGRATFVIEGEVKESQLVELQIGYQDDYKAYFDGFITKAQPAQNGFTRFIARE
RSGLLAARWPISIQHPTVSEVIEQLSFETGLKFVLPEQDYIYNRIPNFTSQGTGYQLLNNLGRAFSIPDFCWYQQTDSTI
YLGSFADSRWQSRPVPLETELSKKQRGGESMTLAVIPSVRPGAIINQKRITEVHFEKDEMTLYWKTESAEKRKMNYLFPE
LAAGHHLPRFARVEAVTDQSIAGHENNPYRPRYAVDVQLLTEHGEVDSLVPIYKAVPLPTVIGGAEQGQFATPSEGTIVE
IAFAYGRSDKPFIRTILGDGWSLPELEPDEQLQQQRHEVFNKTDGAGNTTNSTDQIKHTQAFEHLHEVDKYLGDFGVHEL
NVQQHSKETIAGQKLIETLGAFEVMAGDDVTLGSLSNLHLVNGGNQTQIIGQLRDIVIGLNDKLSVLGERIHTIEKGDTL
IVNGKQTITISKDQIINAMNITQDAKTIKLNGGAGVITCESICPFTGKSHVDGSTTVFAGK
>Mature_541_residues
MKLNKRIFINGEQRKLVSEQVILELSAGGRATFVIEGEVKESQLVELQIGYQDDYKAYFDGFITKAQPAQNGFTRFIARE
RSGLLAARWPISIQHPTVSEVIEQLSFETGLKFVLPEQDYIYNRIPNFTSQGTGYQLLNNLGRAFSIPDFCWYQQTDSTI
YLGSFADSRWQSRPVPLETELSKKQRGGESMTLAVIPSVRPGAIINQKRITEVHFEKDEMTLYWKTESAEKRKMNYLFPE
LAAGHHLPRFARVEAVTDQSIAGHENNPYRPRYAVDVQLLTEHGEVDSLVPIYKAVPLPTVIGGAEQGQFATPSEGTIVE
IAFAYGRSDKPFIRTILGDGWSLPELEPDEQLQQQRHEVFNKTDGAGNTTNSTDQIKHTQAFEHLHEVDKYLGDFGVHEL
NVQQHSKETIAGQKLIETLGAFEVMAGDDVTLGSLSNLHLVNGGNQTQIIGQLRDIVIGLNDKLSVLGERIHTIEKGDTL
IVNGKQTITISKDQIINAMNITQDAKTIKLNGGAGVITCESICPFTGKSHVDGSTTVFAGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60207; Mature: 60207

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNKRIFINGEQRKLVSEQVILELSAGGRATFVIEGEVKESQLVELQIGYQDDYKAYFD
CCCCCEEEEECHHHHHHCEEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHH
GFITKAQPAQNGFTRFIARERSGLLAARWPISIQHPTVSEVIEQLSFETGLKFVLPEQDY
HHCCCCCCCCCHHHHHHHHHCCCEEEEECCEEECCCCHHHHHHHHHHHCCCEEEECCCHH
IYNRIPNFTSQGTGYQLLNNLGRAFSIPDFCWYQQTDSTIYLGSFADSRWQSRPVPLETE
HHHCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCHH
LSKKQRGGESMTLAVIPSVRPGAIINQKRITEVHFEKDEMTLYWKTESAEKRKMNYLFPE
HHHHHCCCCEEEEEEECCCCCCCEECCCCCEEEEECCCCEEEEEECCCCHHHHHHHCCHH
LAAGHHLPRFARVEAVTDQSIAGHENNPYRPRYAVDVQLLTEHGEVDSLVPIYKAVPLPT
HHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHCCCCC
VIGGAEQGQFATPSEGTIVEIAFAYGRSDKPFIRTILGDGWSLPELEPDEQLQQQRHEVF
EECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
NKTDGAGNTTNSTDQIKHTQAFEHLHEVDKYLGDFGVHELNVQQHSKETIAGQKLIETLG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHC
AFEVMAGDDVTLGSLSNLHLVNGGNQTQIIGQLRDIVIGLNDKLSVLGERIHTIEKGDTL
CEEEECCCCEEECCCCCEEEECCCCCHHHHHHHHHHEECCCCHHHHHHHHHHHCCCCCEE
IVNGKQTITISKDQIINAMNITQDAKTIKLNGGAGVITCESICPFTGKSHVDGSTTVFAG
EECCCEEEEECHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCEEEEC
K
C
>Mature Secondary Structure
MKLNKRIFINGEQRKLVSEQVILELSAGGRATFVIEGEVKESQLVELQIGYQDDYKAYFD
CCCCCEEEEECHHHHHHCEEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHH
GFITKAQPAQNGFTRFIARERSGLLAARWPISIQHPTVSEVIEQLSFETGLKFVLPEQDY
HHCCCCCCCCCHHHHHHHHHCCCEEEEECCEEECCCCHHHHHHHHHHHCCCEEEECCCHH
IYNRIPNFTSQGTGYQLLNNLGRAFSIPDFCWYQQTDSTIYLGSFADSRWQSRPVPLETE
HHHCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCHH
LSKKQRGGESMTLAVIPSVRPGAIINQKRITEVHFEKDEMTLYWKTESAEKRKMNYLFPE
HHHHHCCCCEEEEEEECCCCCCCEECCCCCEEEEECCCCEEEEEECCCCHHHHHHHCCHH
LAAGHHLPRFARVEAVTDQSIAGHENNPYRPRYAVDVQLLTEHGEVDSLVPIYKAVPLPT
HHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHCCCCC
VIGGAEQGQFATPSEGTIVEIAFAYGRSDKPFIRTILGDGWSLPELEPDEQLQQQRHEVF
EECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
NKTDGAGNTTNSTDQIKHTQAFEHLHEVDKYLGDFGVHELNVQQHSKETIAGQKLIETLG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHC
AFEVMAGDDVTLGSLSNLHLVNGGNQTQIIGQLRDIVIGLNDKLSVLGERIHTIEKGDTL
CEEEECCCCEEECCCCCEEEECCCCCHHHHHHHHHHEECCCCHHHHHHHHHHHCCCCCEE
IVNGKQTITISKDQIINAMNITQDAKTIKLNGGAGVITCESICPFTGKSHVDGSTTVFAG
EECCCEEEEECHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCEEEEC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA