| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694609
Identifier: 209694609
GI number: 209694609
Start: 1140942
End: 1142567
Strand: Direct
Name: 209694609
Synonym: VSAL_I1049
Alternate gene names: NA
Gene position: 1140942-1142567 (Clockwise)
Preceding gene: 209694608
Following gene: 209694610
Centisome position: 34.31
GC content: 42.56
Gene sequence:
>1626_bases ATGAAGCTAAATAAACGAATTTTCATTAACGGTGAACAAAGAAAGCTAGTATCAGAGCAAGTGATCTTAGAATTATCTGC AGGTGGCCGAGCAACGTTTGTGATTGAAGGCGAAGTAAAAGAAAGCCAATTGGTTGAACTTCAAATAGGGTATCAAGACG ATTACAAAGCCTACTTTGATGGATTCATCACCAAAGCTCAACCAGCTCAAAATGGCTTTACTCGTTTTATTGCTCGTGAG CGTTCAGGGTTACTGGCTGCACGTTGGCCTATCAGTATTCAGCACCCAACCGTATCAGAAGTGATTGAACAACTCAGCTT TGAAACGGGTCTAAAGTTCGTTCTACCAGAGCAAGATTACATTTATAACCGCATTCCTAATTTCACTTCCCAGGGAACGG GTTATCAATTACTAAACAACTTAGGTCGAGCGTTTTCAATTCCTGATTTCTGTTGGTATCAACAAACTGACAGCACCATT TATTTAGGTAGCTTTGCAGATAGTCGATGGCAATCAAGACCGGTCCCATTAGAAACCGAGCTATCCAAAAAACAACGCGG CGGTGAAAGCATGACACTGGCAGTGATCCCCTCGGTTCGTCCTGGTGCCATCATCAACCAAAAACGCATTACTGAAGTGC ATTTTGAAAAAGATGAAATGACACTGTATTGGAAAACGGAATCAGCAGAGAAACGGAAAATGAATTATCTGTTTCCAGAG CTGGCTGCAGGGCATCATTTACCACGCTTTGCCCGAGTGGAAGCAGTCACCGACCAATCCATAGCAGGCCATGAAAATAA CCCATACCGTCCTCGTTATGCGGTTGATGTTCAATTGCTTACAGAGCATGGTGAAGTCGATTCATTAGTGCCAATTTATA AGGCCGTTCCTTTACCAACTGTGATTGGTGGTGCAGAGCAAGGGCAATTTGCCACGCCTAGTGAAGGGACTATTGTCGAG ATTGCGTTTGCTTATGGTCGAAGTGATAAACCGTTTATTAGAACCATTTTAGGTGATGGTTGGTCATTGCCAGAATTAGA GCCTGATGAACAACTGCAACAGCAACGCCATGAGGTATTCAATAAAACCGATGGAGCAGGCAATACCACCAACAGCACTG ACCAAATCAAACACACTCAAGCGTTTGAACATTTACATGAAGTGGATAAATACCTCGGTGATTTTGGTGTGCATGAGCTG AATGTACAACAGCACAGCAAAGAGACTATTGCAGGCCAAAAGCTCATTGAGACATTAGGCGCGTTTGAAGTGATGGCAGG TGACGATGTAACGTTAGGCTCATTATCAAACTTACACCTGGTTAATGGTGGTAACCAAACTCAAATTATCGGCCAGTTAC GAGATATTGTGATCGGCCTGAATGATAAACTCAGTGTTCTTGGTGAGCGAATACATACCATTGAGAAAGGGGATACTTTA ATTGTAAACGGTAAACAGACCATTACCATTTCAAAAGACCAAATCATTAATGCAATGAACATCACTCAAGATGCTAAAAC GATAAAGCTAAACGGTGGAGCAGGGGTTATCACTTGTGAAAGTATCTGTCCGTTTACAGGTAAATCCCATGTGGATGGCT CAACCACTGTATTTGCAGGTAAGTAA
Upstream 100 bases:
>100_bases CAGTGAAACCTAAAGCGCATGCGGCAGTCAGTAACACGACAGATCAATCACAACCGACTCGATTTGAAGACGCATTACTG CAAAAAGAAAGGCAACTGGC
Downstream 100 bases:
>100_bases TATGGCATTAGATAAAGGCTCATTAAAAGCCAAAATAGTAAAAGAGATGCAAGGTAAAGGCATGGTGACAGAAGGTGAGT TTGCGAAAGCGGCAGATTTA
Product: phage protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 541; Mature: 541
Protein sequence:
>541_residues MKLNKRIFINGEQRKLVSEQVILELSAGGRATFVIEGEVKESQLVELQIGYQDDYKAYFDGFITKAQPAQNGFTRFIARE RSGLLAARWPISIQHPTVSEVIEQLSFETGLKFVLPEQDYIYNRIPNFTSQGTGYQLLNNLGRAFSIPDFCWYQQTDSTI YLGSFADSRWQSRPVPLETELSKKQRGGESMTLAVIPSVRPGAIINQKRITEVHFEKDEMTLYWKTESAEKRKMNYLFPE LAAGHHLPRFARVEAVTDQSIAGHENNPYRPRYAVDVQLLTEHGEVDSLVPIYKAVPLPTVIGGAEQGQFATPSEGTIVE IAFAYGRSDKPFIRTILGDGWSLPELEPDEQLQQQRHEVFNKTDGAGNTTNSTDQIKHTQAFEHLHEVDKYLGDFGVHEL NVQQHSKETIAGQKLIETLGAFEVMAGDDVTLGSLSNLHLVNGGNQTQIIGQLRDIVIGLNDKLSVLGERIHTIEKGDTL IVNGKQTITISKDQIINAMNITQDAKTIKLNGGAGVITCESICPFTGKSHVDGSTTVFAGK
Sequences:
>Translated_541_residues MKLNKRIFINGEQRKLVSEQVILELSAGGRATFVIEGEVKESQLVELQIGYQDDYKAYFDGFITKAQPAQNGFTRFIARE RSGLLAARWPISIQHPTVSEVIEQLSFETGLKFVLPEQDYIYNRIPNFTSQGTGYQLLNNLGRAFSIPDFCWYQQTDSTI YLGSFADSRWQSRPVPLETELSKKQRGGESMTLAVIPSVRPGAIINQKRITEVHFEKDEMTLYWKTESAEKRKMNYLFPE LAAGHHLPRFARVEAVTDQSIAGHENNPYRPRYAVDVQLLTEHGEVDSLVPIYKAVPLPTVIGGAEQGQFATPSEGTIVE IAFAYGRSDKPFIRTILGDGWSLPELEPDEQLQQQRHEVFNKTDGAGNTTNSTDQIKHTQAFEHLHEVDKYLGDFGVHEL NVQQHSKETIAGQKLIETLGAFEVMAGDDVTLGSLSNLHLVNGGNQTQIIGQLRDIVIGLNDKLSVLGERIHTIEKGDTL IVNGKQTITISKDQIINAMNITQDAKTIKLNGGAGVITCESICPFTGKSHVDGSTTVFAGK >Mature_541_residues MKLNKRIFINGEQRKLVSEQVILELSAGGRATFVIEGEVKESQLVELQIGYQDDYKAYFDGFITKAQPAQNGFTRFIARE RSGLLAARWPISIQHPTVSEVIEQLSFETGLKFVLPEQDYIYNRIPNFTSQGTGYQLLNNLGRAFSIPDFCWYQQTDSTI YLGSFADSRWQSRPVPLETELSKKQRGGESMTLAVIPSVRPGAIINQKRITEVHFEKDEMTLYWKTESAEKRKMNYLFPE LAAGHHLPRFARVEAVTDQSIAGHENNPYRPRYAVDVQLLTEHGEVDSLVPIYKAVPLPTVIGGAEQGQFATPSEGTIVE IAFAYGRSDKPFIRTILGDGWSLPELEPDEQLQQQRHEVFNKTDGAGNTTNSTDQIKHTQAFEHLHEVDKYLGDFGVHEL NVQQHSKETIAGQKLIETLGAFEVMAGDDVTLGSLSNLHLVNGGNQTQIIGQLRDIVIGLNDKLSVLGERIHTIEKGDTL IVNGKQTITISKDQIINAMNITQDAKTIKLNGGAGVITCESICPFTGKSHVDGSTTVFAGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60207; Mature: 60207
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLNKRIFINGEQRKLVSEQVILELSAGGRATFVIEGEVKESQLVELQIGYQDDYKAYFD CCCCCEEEEECHHHHHHCEEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHH GFITKAQPAQNGFTRFIARERSGLLAARWPISIQHPTVSEVIEQLSFETGLKFVLPEQDY HHCCCCCCCCCHHHHHHHHHCCCEEEEECCEEECCCCHHHHHHHHHHHCCCEEEECCCHH IYNRIPNFTSQGTGYQLLNNLGRAFSIPDFCWYQQTDSTIYLGSFADSRWQSRPVPLETE HHHCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCHH LSKKQRGGESMTLAVIPSVRPGAIINQKRITEVHFEKDEMTLYWKTESAEKRKMNYLFPE HHHHHCCCCEEEEEEECCCCCCCEECCCCCEEEEECCCCEEEEEECCCCHHHHHHHCCHH LAAGHHLPRFARVEAVTDQSIAGHENNPYRPRYAVDVQLLTEHGEVDSLVPIYKAVPLPT HHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHCCCCC VIGGAEQGQFATPSEGTIVEIAFAYGRSDKPFIRTILGDGWSLPELEPDEQLQQQRHEVF EECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHH NKTDGAGNTTNSTDQIKHTQAFEHLHEVDKYLGDFGVHELNVQQHSKETIAGQKLIETLG CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHC AFEVMAGDDVTLGSLSNLHLVNGGNQTQIIGQLRDIVIGLNDKLSVLGERIHTIEKGDTL CEEEECCCCEEECCCCCEEEECCCCCHHHHHHHHHHEECCCCHHHHHHHHHHHCCCCCEE IVNGKQTITISKDQIINAMNITQDAKTIKLNGGAGVITCESICPFTGKSHVDGSTTVFAG EECCCEEEEECHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCEEEEC K C >Mature Secondary Structure MKLNKRIFINGEQRKLVSEQVILELSAGGRATFVIEGEVKESQLVELQIGYQDDYKAYFD CCCCCEEEEECHHHHHHCEEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHH GFITKAQPAQNGFTRFIARERSGLLAARWPISIQHPTVSEVIEQLSFETGLKFVLPEQDY HHCCCCCCCCCHHHHHHHHHCCCEEEEECCEEECCCCHHHHHHHHHHHCCCEEEECCCHH IYNRIPNFTSQGTGYQLLNNLGRAFSIPDFCWYQQTDSTIYLGSFADSRWQSRPVPLETE HHHCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCHH LSKKQRGGESMTLAVIPSVRPGAIINQKRITEVHFEKDEMTLYWKTESAEKRKMNYLFPE HHHHHCCCCEEEEEEECCCCCCCEECCCCCEEEEECCCCEEEEEECCCCHHHHHHHCCHH LAAGHHLPRFARVEAVTDQSIAGHENNPYRPRYAVDVQLLTEHGEVDSLVPIYKAVPLPT HHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHCCCCC VIGGAEQGQFATPSEGTIVEIAFAYGRSDKPFIRTILGDGWSLPELEPDEQLQQQRHEVF EECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHH NKTDGAGNTTNSTDQIKHTQAFEHLHEVDKYLGDFGVHELNVQQHSKETIAGQKLIETLG CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHC AFEVMAGDDVTLGSLSNLHLVNGGNQTQIIGQLRDIVIGLNDKLSVLGERIHTIEKGDTL CEEEECCCCEEECCCCCEEEECCCCCHHHHHHHHHHEECCCCHHHHHHHHHHHCCCCCEE IVNGKQTITISKDQIINAMNITQDAKTIKLNGGAGVITCESICPFTGKSHVDGSTTVFAG EECCCEEEEECHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCEEEEC K C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA