| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694607
Identifier: 209694607
GI number: 209694607
Start: 1139507
End: 1140400
Strand: Direct
Name: 209694607
Synonym: VSAL_I1047
Alternate gene names: NA
Gene position: 1139507-1140400 (Clockwise)
Preceding gene: 209694606
Following gene: 209694608
Centisome position: 34.27
GC content: 42.84
Gene sequence:
>894_bases ATGACTTGGCAAACTGCATCACATCAATGGCCTGACAGTACGCAGGCCATTCAAACTCAAAGTGAAACGGTACTCAAGCA AGTTGCTGGTAAAATGGATGAGTCAGCAAACCGAGTTGAAACCTTAGCCTCAAAGGTAGCGCTGGCGCGTCATCCATTAA GTACAGAAGCTGAAAGTTTACTTCATTTACGTGCAGAGCTAGAAAGCCTGATGTGCAAAGGGCAAATATTGTGTGTTCAT CCTTATCAGTATCAAGTTGGTAATCAGGTTGAATCTGGACAGCATTTATCACCAGATACCGCCATTGAAACACTACGAGC CAAACTGTTTGATGTGAACGACAAACACAAACCAACAGGACAGCTTTATGCACTCGGTTGGATGATTGCTGAAAACTCCC TGGCTAACTTTGCCCAAGCCACTAAAGCGTTGTTTGATGTCGTTAACATTCCAGAGCTTGGCATGGTCGCAAGGCGCACC GGCAAAGAGCAAAGTTTACAAACAGATAAATTCACAAAACATAATGCGATTATTCAGCCACGCTTTAAACCAACGGCTCA CATTAATCAGCAACCAATAAGAAGTGCTTTGAATTGGCAAGGTTCACAACTGGCACAACTTGAATCATTGGCAGCAGATA AAAATACACCGGCACAAAAACTGGCAGCATTAGCGCAAAAAAGAACACAACAACTGGAAGAGTGGACCGCTTCACTAAAT CAACTCAAATACCGCAATATCAGTGTATTGAAATTTGAAGCACAAGGCACAACAGAGGTAATTGCCACCATGCTTAAAGA ATCACAAGCACCAAGCCATGCCAACAGTTATACCTTTAGCGCACTCTTTTTAAGCACTGAGCCATTAACCTTTTTAACGG AGTTATTCGCATGA
Upstream 100 bases:
>100_bases TAAAAGATTACATAAGAGCGATAAAGCCTGATGCAGTAACTAGAAGCATTCCAGTTCGCCCTGAAATCATGAATCAGTAT GAAAAATTAAGTGGCATCTA
Downstream 100 bases:
>100_bases CCCAACTTGCCCTTGATGCTGAGATCATTCCGCTAAAATCACCAAGAATAAATCTGAGCTTAGAATTAAAAGCCGAAGAC ATGAGTGGCCAAACATCAGG
Product: phage protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MTWQTASHQWPDSTQAIQTQSETVLKQVAGKMDESANRVETLASKVALARHPLSTEAESLLHLRAELESLMCKGQILCVH PYQYQVGNQVESGQHLSPDTAIETLRAKLFDVNDKHKPTGQLYALGWMIAENSLANFAQATKALFDVVNIPELGMVARRT GKEQSLQTDKFTKHNAIIQPRFKPTAHINQQPIRSALNWQGSQLAQLESLAADKNTPAQKLAALAQKRTQQLEEWTASLN QLKYRNISVLKFEAQGTTEVIATMLKESQAPSHANSYTFSALFLSTEPLTFLTELFA
Sequences:
>Translated_297_residues MTWQTASHQWPDSTQAIQTQSETVLKQVAGKMDESANRVETLASKVALARHPLSTEAESLLHLRAELESLMCKGQILCVH PYQYQVGNQVESGQHLSPDTAIETLRAKLFDVNDKHKPTGQLYALGWMIAENSLANFAQATKALFDVVNIPELGMVARRT GKEQSLQTDKFTKHNAIIQPRFKPTAHINQQPIRSALNWQGSQLAQLESLAADKNTPAQKLAALAQKRTQQLEEWTASLN QLKYRNISVLKFEAQGTTEVIATMLKESQAPSHANSYTFSALFLSTEPLTFLTELFA >Mature_296_residues TWQTASHQWPDSTQAIQTQSETVLKQVAGKMDESANRVETLASKVALARHPLSTEAESLLHLRAELESLMCKGQILCVHP YQYQVGNQVESGQHLSPDTAIETLRAKLFDVNDKHKPTGQLYALGWMIAENSLANFAQATKALFDVVNIPELGMVARRTG KEQSLQTDKFTKHNAIIQPRFKPTAHINQQPIRSALNWQGSQLAQLESLAADKNTPAQKLAALAQKRTQQLEEWTASLNQ LKYRNISVLKFEAQGTTEVIATMLKESQAPSHANSYTFSALFLSTEPLTFLTELFA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33069; Mature: 32938
Theoretical pI: Translated: 7.76; Mature: 7.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTWQTASHQWPDSTQAIQTQSETVLKQVAGKMDESANRVETLASKVALARHPLSTEAESL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHH LHLRAELESLMCKGQILCVHPYQYQVGNQVESGQHLSPDTAIETLRAKLFDVNDKHKPTG HHHHHHHHHHHHCCCEEEECCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC QLYALGWMIAENSLANFAQATKALFDVVNIPELGMVARRTGKEQSLQTDKFTKHNAIIQP CEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHCCHHHHHCCCCEECC RFKPTAHINQQPIRSALNWQGSQLAQLESLAADKNTPAQKLAALAQKRTQQLEEWTASLN CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QLKYRNISVLKFEAQGTTEVIATMLKESQAPSHANSYTFSALFLSTEPLTFLTELFA HHHCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHC >Mature Secondary Structure TWQTASHQWPDSTQAIQTQSETVLKQVAGKMDESANRVETLASKVALARHPLSTEAESL CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHH LHLRAELESLMCKGQILCVHPYQYQVGNQVESGQHLSPDTAIETLRAKLFDVNDKHKPTG HHHHHHHHHHHHCCCEEEECCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC QLYALGWMIAENSLANFAQATKALFDVVNIPELGMVARRTGKEQSLQTDKFTKHNAIIQP CEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHCCHHHHHCCCCEECC RFKPTAHINQQPIRSALNWQGSQLAQLESLAADKNTPAQKLAALAQKRTQQLEEWTASLN CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QLKYRNISVLKFEAQGTTEVIATMLKESQAPSHANSYTFSALFLSTEPLTFLTELFA HHHCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA