| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694608
Identifier: 209694608
GI number: 209694608
Start: 1140397
End: 1140945
Strand: Direct
Name: 209694608
Synonym: VSAL_I1048
Alternate gene names: NA
Gene position: 1140397-1140945 (Clockwise)
Preceding gene: 209694607
Following gene: 209694609
Centisome position: 34.3
GC content: 43.17
Gene sequence:
>549_bases ATGACCCAACTTGCCCTTGATGCTGAGATCATTCCGCTAAAATCACCAAGAATAAATCTGAGCTTAGAATTAAAAGCCGA AGACATGAGTGGCCAAACATCAGGAACGGACGCAAGCGAGCAGGGTGATAAAGGCATGGTGCTTTCAGTCAGTGGATTAA TTCCATTCAAAGAAAGTAAAACCTTAAAACGTTTGATGGTGCTATCTCGCCAAAAAGAAGACGGTAAACGCAAAATCTAT CGTATTGGTAATGAGCTGGCCAAAAGCATGACCATTCGGCAGGTGCGATTCATGGGCCGAGTTACTGCCGATGAACAAGA AAACCTAATGGCATGGAAAGTGAGCTTTCAACTGCGTGAGCATTTATCAGTATCAGAAGTAAAAGAGCAACGAGAAAACG AAAAAGAGAAACAAGTTCAAACAGATAGCACAGAGAATACTGCAGCAGTGAAACCTAAAGCGCATGCGGCAGTCAGTAAC ACGACAGATCAATCACAACCGACTCGATTTGAAGACGCATTACTGCAAAAAGAAAGGCAACTGGCATGA
Upstream 100 bases:
>100_bases TGCTTAAAGAATCACAAGCACCAAGCCATGCCAACAGTTATACCTTTAGCGCACTCTTTTTAAGCACTGAGCCATTAACC TTTTTAACGGAGTTATTCGC
Downstream 100 bases:
>100_bases AGCTAAATAAACGAATTTTCATTAACGGTGAACAAAGAAAGCTAGTATCAGAGCAAGTGATCTTAGAATTATCTGCAGGT GGCCGAGCAACGTTTGTGAT
Product: phage protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 182; Mature: 181
Protein sequence:
>182_residues MTQLALDAEIIPLKSPRINLSLELKAEDMSGQTSGTDASEQGDKGMVLSVSGLIPFKESKTLKRLMVLSRQKEDGKRKIY RIGNELAKSMTIRQVRFMGRVTADEQENLMAWKVSFQLREHLSVSEVKEQRENEKEKQVQTDSTENTAAVKPKAHAAVSN TTDQSQPTRFEDALLQKERQLA
Sequences:
>Translated_182_residues MTQLALDAEIIPLKSPRINLSLELKAEDMSGQTSGTDASEQGDKGMVLSVSGLIPFKESKTLKRLMVLSRQKEDGKRKIY RIGNELAKSMTIRQVRFMGRVTADEQENLMAWKVSFQLREHLSVSEVKEQRENEKEKQVQTDSTENTAAVKPKAHAAVSN TTDQSQPTRFEDALLQKERQLA >Mature_181_residues TQLALDAEIIPLKSPRINLSLELKAEDMSGQTSGTDASEQGDKGMVLSVSGLIPFKESKTLKRLMVLSRQKEDGKRKIYR IGNELAKSMTIRQVRFMGRVTADEQENLMAWKVSFQLREHLSVSEVKEQRENEKEKQVQTDSTENTAAVKPKAHAAVSNT TDQSQPTRFEDALLQKERQLA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20504; Mature: 20372
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQLALDAEIIPLKSPRINLSLELKAEDMSGQTSGTDASEQGDKGMVLSVSGLIPFKESK CCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHH TLKRLMVLSRQKEDGKRKIYRIGNELAKSMTIRQVRFMGRVTADEQENLMAWKVSFQLRE HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHH HLSVSEVKEQRENEKEKQVQTDSTENTAAVKPKAHAAVSNTTDQSQPTRFEDALLQKERQ CCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC LA CC >Mature Secondary Structure TQLALDAEIIPLKSPRINLSLELKAEDMSGQTSGTDASEQGDKGMVLSVSGLIPFKESK CCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHH TLKRLMVLSRQKEDGKRKIYRIGNELAKSMTIRQVRFMGRVTADEQENLMAWKVSFQLRE HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHH HLSVSEVKEQRENEKEKQVQTDSTENTAAVKPKAHAAVSNTTDQSQPTRFEDALLQKERQ CCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC LA CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA