| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694603
Identifier: 209694603
GI number: 209694603
Start: 1135222
End: 1136406
Strand: Direct
Name: 209694603
Synonym: VSAL_I1043
Alternate gene names: NA
Gene position: 1135222-1136406 (Clockwise)
Preceding gene: 209694602
Following gene: 209694604
Centisome position: 34.14
GC content: 42.36
Gene sequence:
>1185_bases ATGAGTACAAGACCACTGGTTGATTTTAAGCAAATCATTGCTGATGAAGGGATCCCAACAACAGAAGAAGCCATTGCGAT TGAACTTGAAAAAGAAGTGGTCGCAGCAGGCAGTAAGGTTAGTAATGACAGCCGAATGTCACCGTTCTGGCGATTGGTTA AAGCAATTGTTATCACGCCAACGCTATGGCTTATTGAACAATTATTAGCAAGTCATGTATTACCTAATACCTTCGCAGCA ACAGCAAGTAAGGGTTACCTTGATTTAAAAGCATGGGATGTGGATTTAGAGCGAAAGATGGCAACAAAAACCCGTGGTGT GGTCGAGTTCTTTAAAGAGGTAGCGGAAAATCCTATCGTGATCTTAAAAGGTACGATTATTGAAACGAGCCGAATTGAAG ACAAGATTTATCGTTTAATTGTTGTAGAAGATGTGCTTATTCAAGCAAACCAAGCCAGTGGTTTTGTGTTGTGTGAAGCG CAAGAAGCCGGAGCAGGGTACAACTTACCTGCCGGGTATTACTCAATTTTACCTGTTGGGGTGTCAGGCATTACCCATGC AGTGAACCAAGCCGATTGGATCACAACACCAGGCGCAAACACGGAAGAAGATGATGAACTGGCATTACGTATCCGTAATC AATTCAGTGTTGTTGGTCGCTATCATATTGATGCTATTTATCGCTCAATGTTGGCCAGTGTTGCTGGCGTAAGAAGTGAT CAGATTTACTTTCTGCATGATGCACCAAGAGGACCAGGAACAGCAAATGCTTACATCTTGCTGGATGTTGGTGAAACCCC AAGTCATTTATTAGAGCAGTTGAATAATTTTGTGATGTTCGAGGGTAACCATGGCCATGGTGATGACATTTTGTGTTTAG CCTTACCTGAAACTCAGCATTCAGTATCAGTGACTATTTGGCCGAGAGTGAACACCAGTGAAGAACGTGTTGCCGCCCTA AAGGTAGAAATAGAAAACATGATCCGAGCGGCGTTCAGAGAAAGTGATTCTTACTCGGTGGTAACCAGAACCTATCCATC ATCAATGTTTTCATTCAGCCAACTCACAACAGAAATTCATACTGAATTGGCAGAAGATTTACTCAGCCTTGAGTTTTCAA ACAGTGACATCGTGAGTGAATTAAATATTCCAAGGTTAAGCAACGTGGCGGTGATGAATGGATAA
Upstream 100 bases:
>100_bases TTGAGCCAGGAACGGCAGAGATTGAAGAGCAAACGGCAGAGCAATTATGGATGTTTGCTGAAACGGTAGATAACGACAAT ATCGAAATGGGAATGCCATT
Downstream 100 bases:
>100_bases AACAACCAACCATGAAAACGATGCACCCGAATTACCCACTGAAAATGTACCTTGGTGGATGGATGGTAAAACCATTGCTG AAACTCTAAAAGAACCACAC
Product: phage protein
Products: NA
Alternate protein names: Bacteriophage Protein; Baseplate J Family Protein; Phage Gene; Baseplate Assembly Protein; NAD Synthase; Phage-Like Protein; Phage Protein
Number of amino acids: Translated: 394; Mature: 393
Protein sequence:
>394_residues MSTRPLVDFKQIIADEGIPTTEEAIAIELEKEVVAAGSKVSNDSRMSPFWRLVKAIVITPTLWLIEQLLASHVLPNTFAA TASKGYLDLKAWDVDLERKMATKTRGVVEFFKEVAENPIVILKGTIIETSRIEDKIYRLIVVEDVLIQANQASGFVLCEA QEAGAGYNLPAGYYSILPVGVSGITHAVNQADWITTPGANTEEDDELALRIRNQFSVVGRYHIDAIYRSMLASVAGVRSD QIYFLHDAPRGPGTANAYILLDVGETPSHLLEQLNNFVMFEGNHGHGDDILCLALPETQHSVSVTIWPRVNTSEERVAAL KVEIENMIRAAFRESDSYSVVTRTYPSSMFSFSQLTTEIHTELAEDLLSLEFSNSDIVSELNIPRLSNVAVMNG
Sequences:
>Translated_394_residues MSTRPLVDFKQIIADEGIPTTEEAIAIELEKEVVAAGSKVSNDSRMSPFWRLVKAIVITPTLWLIEQLLASHVLPNTFAA TASKGYLDLKAWDVDLERKMATKTRGVVEFFKEVAENPIVILKGTIIETSRIEDKIYRLIVVEDVLIQANQASGFVLCEA QEAGAGYNLPAGYYSILPVGVSGITHAVNQADWITTPGANTEEDDELALRIRNQFSVVGRYHIDAIYRSMLASVAGVRSD QIYFLHDAPRGPGTANAYILLDVGETPSHLLEQLNNFVMFEGNHGHGDDILCLALPETQHSVSVTIWPRVNTSEERVAAL KVEIENMIRAAFRESDSYSVVTRTYPSSMFSFSQLTTEIHTELAEDLLSLEFSNSDIVSELNIPRLSNVAVMNG >Mature_393_residues STRPLVDFKQIIADEGIPTTEEAIAIELEKEVVAAGSKVSNDSRMSPFWRLVKAIVITPTLWLIEQLLASHVLPNTFAAT ASKGYLDLKAWDVDLERKMATKTRGVVEFFKEVAENPIVILKGTIIETSRIEDKIYRLIVVEDVLIQANQASGFVLCEAQ EAGAGYNLPAGYYSILPVGVSGITHAVNQADWITTPGANTEEDDELALRIRNQFSVVGRYHIDAIYRSMLASVAGVRSDQ IYFLHDAPRGPGTANAYILLDVGETPSHLLEQLNNFVMFEGNHGHGDDILCLALPETQHSVSVTIWPRVNTSEERVAALK VEIENMIRAAFRESDSYSVVTRTYPSSMFSFSQLTTEIHTELAEDLLSLEFSNSDIVSELNIPRLSNVAVMNG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43529; Mature: 43398
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTRPLVDFKQIIADEGIPTTEEAIAIELEKEVVAAGSKVSNDSRMSPFWRLVKAIVITP CCCCCCHHHHHHHHCCCCCCCCHHEEEEEHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC TLWLIEQLLASHVLPNTFAATASKGYLDLKAWDVDLERKMATKTRGVVEFFKEVAENPIV HHHHHHHHHHHHCCCCCHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEE ILKGTIIETSRIEDKIYRLIVVEDVLIQANQASGFVLCEAQEAGAGYNLPAGYYSILPVG EEEEEEEEHHHHHHHHHEEEEEEHHHEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEC VSGITHAVNQADWITTPGANTEEDDELALRIRNQFSVVGRYHIDAIYRSMLASVAGVRSD HHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC QIYFLHDAPRGPGTANAYILLDVGETPSHLLEQLNNFVMFEGNHGHGDDILCLALPETQH CEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCCC SVSVTIWPRVNTSEERVAALKVEIENMIRAAFRESDSYSVVTRTYPSSMFSFSQLTTEIH EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHH TELAEDLLSLEFSNSDIVSELNIPRLSNVAVMNG HHHHHHHHHEECCCCCHHHHCCCCCCCCEEEECC >Mature Secondary Structure STRPLVDFKQIIADEGIPTTEEAIAIELEKEVVAAGSKVSNDSRMSPFWRLVKAIVITP CCCCCHHHHHHHHCCCCCCCCHHEEEEEHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC TLWLIEQLLASHVLPNTFAATASKGYLDLKAWDVDLERKMATKTRGVVEFFKEVAENPIV HHHHHHHHHHHHCCCCCHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEE ILKGTIIETSRIEDKIYRLIVVEDVLIQANQASGFVLCEAQEAGAGYNLPAGYYSILPVG EEEEEEEEHHHHHHHHHEEEEEEHHHEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEC VSGITHAVNQADWITTPGANTEEDDELALRIRNQFSVVGRYHIDAIYRSMLASVAGVRSD HHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC QIYFLHDAPRGPGTANAYILLDVGETPSHLLEQLNNFVMFEGNHGHGDDILCLALPETQH CEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCCC SVSVTIWPRVNTSEERVAALKVEIENMIRAAFRESDSYSVVTRTYPSSMFSFSQLTTEIH EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHH TELAEDLLSLEFSNSDIVSELNIPRLSNVAVMNG HHHHHHHHHEECCCCCHHHHCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA