| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694600
Identifier: 209694600
GI number: 209694600
Start: 1132337
End: 1132600
Strand: Direct
Name: 209694600
Synonym: VSAL_I1040
Alternate gene names: NA
Gene position: 1132337-1132600 (Clockwise)
Preceding gene: 209694599
Following gene: 209694601
Centisome position: 34.05
GC content: 37.5
Gene sequence:
>264_bases ATGACAACCCCAATCATCATTACAGCAGCAGGCAAAGATTTACGTTTTACTCCTGATTTACCAACGTACAACAAATACAT CAATGAAATGATGCCACATGACAAAGTGTCACCAGCAACCAATTATCTGCGTCGTATCGTTCATAAAGACGATAAAGCAC ATTTAGATGAAATGCTGAAAATTCCAAGTGCTTTGATGCGTATCCTGGCAAAAGTAAATGACGCTTTTGAAGGTGATCTG GAAATCGAAGTAAAAAACTCTTAA
Upstream 100 bases:
>100_bases CAACAAAAGATGAAGTGAAAGATGCAATTGAGCGTGTAGAACGCCAGATTGAGATCGGCTTCAACCGTATTTATGAAACC TTAAACAAGAGAGATGCAGC
Downstream 100 bases:
>100_bases GGCACGTCAAAGCGATTGAAAGTAATGGGCTAGAGCAAGCATTAGCATTGAAAGCCCATTACCTACCCAATCAACCTGAT ACCACCGAGAATTTAGCCAG
Product: orf30
Products: NA
Alternate protein names: Phage Protein
Number of amino acids: Translated: 87; Mature: 86
Protein sequence:
>87_residues MTTPIIITAAGKDLRFTPDLPTYNKYINEMMPHDKVSPATNYLRRIVHKDDKAHLDEMLKIPSALMRILAKVNDAFEGDL EIEVKNS
Sequences:
>Translated_87_residues MTTPIIITAAGKDLRFTPDLPTYNKYINEMMPHDKVSPATNYLRRIVHKDDKAHLDEMLKIPSALMRILAKVNDAFEGDL EIEVKNS >Mature_86_residues TTPIIITAAGKDLRFTPDLPTYNKYINEMMPHDKVSPATNYLRRIVHKDDKAHLDEMLKIPSALMRILAKVNDAFEGDLE IEVKNS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9926; Mature: 9794
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.7 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPIIITAAGKDLRFTPDLPTYNKYINEMMPHDKVSPATNYLRRIVHKDDKAHLDEMLK CCCCEEEEECCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH IPSALMRILAKVNDAFEGDLEIEVKNS HHHHHHHHHHHHCCCCCCCEEEEEECC >Mature Secondary Structure TTPIIITAAGKDLRFTPDLPTYNKYINEMMPHDKVSPATNYLRRIVHKDDKAHLDEMLK CCCEEEEECCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH IPSALMRILAKVNDAFEGDLEIEVKNS HHHHHHHHHHHHCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA