| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694595
Identifier: 209694595
GI number: 209694595
Start: 1130749
End: 1131204
Strand: Direct
Name: 209694595
Synonym: VSAL_I1035
Alternate gene names: NA
Gene position: 1130749-1131204 (Clockwise)
Preceding gene: 209694594
Following gene: 209694596
Centisome position: 34.01
GC content: 41.45
Gene sequence:
>456_bases ATGTCTAAACGTATTTCAGGATTAAGTTTTGATGTTGATATTCATGGTGTACTTATCCATGTGGAAAAAGCGACAGTCAC CATTTCAGATGAAAGTGCAGCAGCCTCAACTCGTGGCGTTCCTGATGGTTTCACTGATGGGGCCGTGAGTGCCGAAGGGG ATTATGAGTTAGATACTAAAAACTTTAATTTGTTAGGTGAAGCTGCAGCAAAAGCAGGCAGCTGGCGAGCGATTAAACCC CATGATTGTTTGTTCTATGCCAATACGGGCTCTGAAGAATTTAAAGCTGAAGTCTTTGGTGTGAAGTTAATGATCGACAG CTTGTTAGATATTGACCCGTCATCATCGGACAAATCCAAGCACAAAATCAAGTTTGTTGTAACAAGCCCTGATTTTATTC ATATCAACGGTACTCCGTATCTTAGCTCAGAAGATACACGAGATCTGATTGGCTAA
Upstream 100 bases:
>100_bases AAAATTCAGTCGGTATTTATATGGCAGCACAGCCGAAAGATTGCCCGAAGAAAATTACGGCAAATCTAATGTTAGATTTA AGTAATCCGGGGGACAAATA
Downstream 100 bases:
>100_bases AAGGGGATTATATGGATGCGTTCGATAGAGCCAGTGCGCTTGAAGCCAAACAGACTGAAGTGGCACTTGCCAACCACATG GCAAAGCAAAAAAACAAAGT
Product: tail tube protein
Products: NA
Alternate protein names: Phage Protein; Phage Gene; Tail Tube; Tail Tube Protein; Tail Tube Protein Bacteriophage Origin; Phage Tail Tube Protein
Number of amino acids: Translated: 151; Mature: 150
Protein sequence:
>151_residues MSKRISGLSFDVDIHGVLIHVEKATVTISDESAAASTRGVPDGFTDGAVSAEGDYELDTKNFNLLGEAAAKAGSWRAIKP HDCLFYANTGSEEFKAEVFGVKLMIDSLLDIDPSSSDKSKHKIKFVVTSPDFIHINGTPYLSSEDTRDLIG
Sequences:
>Translated_151_residues MSKRISGLSFDVDIHGVLIHVEKATVTISDESAAASTRGVPDGFTDGAVSAEGDYELDTKNFNLLGEAAAKAGSWRAIKP HDCLFYANTGSEEFKAEVFGVKLMIDSLLDIDPSSSDKSKHKIKFVVTSPDFIHINGTPYLSSEDTRDLIG >Mature_150_residues SKRISGLSFDVDIHGVLIHVEKATVTISDESAAASTRGVPDGFTDGAVSAEGDYELDTKNFNLLGEAAAKAGSWRAIKPH DCLFYANTGSEEFKAEVFGVKLMIDSLLDIDPSSSDKSKHKIKFVVTSPDFIHINGTPYLSSEDTRDLIG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16267; Mature: 16136
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKRISGLSFDVDIHGVLIHVEKATVTISDESAAASTRGVPDGFTDGAVSAEGDYELDTK CCCCCCCEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCEEECCC NFNLLGEAAAKAGSWRAIKPHDCLFYANTGSEEFKAEVFGVKLMIDSLLDIDPSSSDKSK CCEEEEHHHHCCCCCCEECCCCEEEEECCCCCHHEEEEEEHEEEEHHHHCCCCCCCCCCC HKIKFVVTSPDFIHINGTPYLSSEDTRDLIG EEEEEEEECCCEEEECCCCCCCCCCCCCCCC >Mature Secondary Structure SKRISGLSFDVDIHGVLIHVEKATVTISDESAAASTRGVPDGFTDGAVSAEGDYELDTK CCCCCCEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCEEECCC NFNLLGEAAAKAGSWRAIKPHDCLFYANTGSEEFKAEVFGVKLMIDSLLDIDPSSSDKSK CCEEEEHHHHCCCCCCEECCCCEEEEECCCCCHHEEEEEEHEEEEHHHHCCCCCCCCCCC HKIKFVVTSPDFIHINGTPYLSSEDTRDLIG EEEEEEEECCCEEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA