| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694594
Identifier: 209694594
GI number: 209694594
Start: 1129637
End: 1130749
Strand: Direct
Name: 209694594
Synonym: VSAL_I1034
Alternate gene names: NA
Gene position: 1129637-1130749 (Clockwise)
Preceding gene: 209694593
Following gene: 209694595
Centisome position: 33.97
GC content: 43.22
Gene sequence:
>1113_bases ATGGCGTGGCCAATTGTACAAATTAATACTCTGAACCTGATGCAAGGACCAGTGAACGAAGTTGAACGTCACTTCCTCTA TGTCGGTTTAGGAACTAAGAACGCAGGCAGTTTATTGTCTGTGAACACACAAAGTGATTTTTCAGCGCTATTGGATGATG GCTCAGAATTAAAAGCCAATGTTGAAGCAGCAATGCTGAACGCTGGTCAAAACTGGACTGCAGGCGTTTATGTATTAACA GCCCCTGAAAACTGGGTTGAAGCCGTTAAAACCGCGCAACAAACTCAAAGTTTTGAAGCGGTCGTATTAACAGCGCCAAC AACAGATAAAGCCACCGTGACTGCAGCCCAAGCGCTTTATCATGAGCTGATTGCTAAATATGGTCGTTGGACATTCATGA TGCTTGCGACACCAGGTATTGATAAGAAAACACAAACCTGGTCTGAATATGAAGCAGCAACCGTTGCCATTCAAGATACG ATTGCCGCTGATGGTGTCATGTTAGTACCACAAATATTCCCTGATGCTATTGGCAAACTTGCTGGCCGTTTATGTAATCG AGCCGCTTCAATTGCTGATACACCAATGCGTATTAAAACAGGTCCATTAGTTGGTGATGTCACTTTGCCTGTTGATAGTG CTGGTGCAGAGCTAACAACGGCAACCTTACAAACATTAGAAAGTAATCGTTTTTCAGTCCCTGCTTGGTTTCCTGATTAC GATGGTATTTTCTGGGCTGATGGTCGTTTATTAGATGCTGAAGGCGGTGATTATCAGGTGATTGAATATCGCCGAATTAT CGACAAAGTGGCTCGTCGTATTCGATTAATTGCCATTTCTGATATTGGTGACCGTTCTTTCAATAGTACGCCTGCTAGTA CTGCTCGTGCTCAAAATCGTTATTGTCGACCACTGCGTGAAATGGCTAAATCAGCCACCGTTGGTGAGATGGTATTCCCT GGTGAAATTGAAACCCCAAGTTCAGATGACATCACCATCATGTGGGAAAACAAAAATTCAGTCGGTATTTATATGGCAGC ACAGCCGAAAGATTGCCCGAAGAAAATTACGGCAAATCTAATGTTAGATTTAAGTAATCCGGGGGACAAATAA
Upstream 100 bases:
>100_bases CAAAATACCAGCAAGACCGTTCTTGCAGATAGACAAGAAACAAATGCGAAAAATAGCAAAAGAAGAACTGAATTCTCGTT AACCCAAAAGAGGAAGAGCA
Downstream 100 bases:
>100_bases TGTCTAAACGTATTTCAGGATTAAGTTTTGATGTTGATATTCATGGTGTACTTATCCATGTGGAAAAAGCGACAGTCACC ATTTCAGATGAAAGTGCAGC
Product: tail sheat protein
Products: NA
Alternate protein names: Tail Sheath Protein; Phage Gene; Phage Protein; Tail Sheath; Tail Sheath Protein Bacteriophage Origin; Biotin Carboxylase; Tail Sheat Protein
Number of amino acids: Translated: 370; Mature: 369
Protein sequence:
>370_residues MAWPIVQINTLNLMQGPVNEVERHFLYVGLGTKNAGSLLSVNTQSDFSALLDDGSELKANVEAAMLNAGQNWTAGVYVLT APENWVEAVKTAQQTQSFEAVVLTAPTTDKATVTAAQALYHELIAKYGRWTFMMLATPGIDKKTQTWSEYEAATVAIQDT IAADGVMLVPQIFPDAIGKLAGRLCNRAASIADTPMRIKTGPLVGDVTLPVDSAGAELTTATLQTLESNRFSVPAWFPDY DGIFWADGRLLDAEGGDYQVIEYRRIIDKVARRIRLIAISDIGDRSFNSTPASTARAQNRYCRPLREMAKSATVGEMVFP GEIETPSSDDITIMWENKNSVGIYMAAQPKDCPKKITANLMLDLSNPGDK
Sequences:
>Translated_370_residues MAWPIVQINTLNLMQGPVNEVERHFLYVGLGTKNAGSLLSVNTQSDFSALLDDGSELKANVEAAMLNAGQNWTAGVYVLT APENWVEAVKTAQQTQSFEAVVLTAPTTDKATVTAAQALYHELIAKYGRWTFMMLATPGIDKKTQTWSEYEAATVAIQDT IAADGVMLVPQIFPDAIGKLAGRLCNRAASIADTPMRIKTGPLVGDVTLPVDSAGAELTTATLQTLESNRFSVPAWFPDY DGIFWADGRLLDAEGGDYQVIEYRRIIDKVARRIRLIAISDIGDRSFNSTPASTARAQNRYCRPLREMAKSATVGEMVFP GEIETPSSDDITIMWENKNSVGIYMAAQPKDCPKKITANLMLDLSNPGDK >Mature_369_residues AWPIVQINTLNLMQGPVNEVERHFLYVGLGTKNAGSLLSVNTQSDFSALLDDGSELKANVEAAMLNAGQNWTAGVYVLTA PENWVEAVKTAQQTQSFEAVVLTAPTTDKATVTAAQALYHELIAKYGRWTFMMLATPGIDKKTQTWSEYEAATVAIQDTI AADGVMLVPQIFPDAIGKLAGRLCNRAASIADTPMRIKTGPLVGDVTLPVDSAGAELTTATLQTLESNRFSVPAWFPDYD GIFWADGRLLDAEGGDYQVIEYRRIIDKVARRIRLIAISDIGDRSFNSTPASTARAQNRYCRPLREMAKSATVGEMVFPG EIETPSSDDITIMWENKNSVGIYMAAQPKDCPKKITANLMLDLSNPGDK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40317; Mature: 40186
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWPIVQINTLNLMQGPVNEVERHFLYVGLGTKNAGSLLSVNTQSDFSALLDDGSELKAN CCCCEEEEEEEHHCCCCHHHHCCEEEEEEECCCCCCCEEEECCCHHHHHHHCCCCHHHHH VEAAMLNAGQNWTAGVYVLTAPENWVEAVKTAQQTQSFEAVVLTAPTTDKATVTAAQALY HEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH HELIAKYGRWTFMMLATPGIDKKTQTWSEYEAATVAIQDTIAADGVMLVPQIFPDAIGKL HHHHHHCCCEEEEEEECCCCCCCCCCHHHHCEEEEEEEHHHCCCCEEECHHHHHHHHHHH AGRLCNRAASIADTPMRIKTGPLVGDVTLPVDSAGAELTTATLQTLESNRFSVPAWFPDY HHHHHHHHHHCCCCCEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHCCCEECCEECCCC DGIFWADGRLLDAEGGDYQVIEYRRIIDKVARRIRLIAISDIGDRSFNSTPASTARAQNR CCEEEECCEEEECCCCCEEEHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHH YCRPLREMAKSATVGEMVFPGEIETPSSDDITIMWENKNSVGIYMAAQPKDCPKKITANL HHHHHHHHHHCCCCCCEECCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHEEEEE MLDLSNPGDK EEEECCCCCC >Mature Secondary Structure AWPIVQINTLNLMQGPVNEVERHFLYVGLGTKNAGSLLSVNTQSDFSALLDDGSELKAN CCCEEEEEEEHHCCCCHHHHCCEEEEEEECCCCCCCEEEECCCHHHHHHHCCCCHHHHH VEAAMLNAGQNWTAGVYVLTAPENWVEAVKTAQQTQSFEAVVLTAPTTDKATVTAAQALY HEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH HELIAKYGRWTFMMLATPGIDKKTQTWSEYEAATVAIQDTIAADGVMLVPQIFPDAIGKL HHHHHHCCCEEEEEEECCCCCCCCCCHHHHCEEEEEEEHHHCCCCEEECHHHHHHHHHHH AGRLCNRAASIADTPMRIKTGPLVGDVTLPVDSAGAELTTATLQTLESNRFSVPAWFPDY HHHHHHHHHHCCCCCEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHCCCEECCEECCCC DGIFWADGRLLDAEGGDYQVIEYRRIIDKVARRIRLIAISDIGDRSFNSTPASTARAQNR CCEEEECCEEEECCCCCEEEHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHH YCRPLREMAKSATVGEMVFPGEIETPSSDDITIMWENKNSVGIYMAAQPKDCPKKITANL HHHHHHHHHHCCCCCCEECCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHEEEEE MLDLSNPGDK EEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA