| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694592
Identifier: 209694592
GI number: 209694592
Start: 1127935
End: 1128399
Strand: Direct
Name: 209694592
Synonym: VSAL_I1031
Alternate gene names: NA
Gene position: 1127935-1128399 (Clockwise)
Preceding gene: 209694591
Following gene: 209694593
Centisome position: 33.92
GC content: 41.72
Gene sequence:
>465_bases ATGTTTAGTGGTTCATCAGGCGCAGACTATCAAGACACCGTGATCGAGAATGATGGCTTTTGGCCTAACTTGAATGCCGG TGATTTTGAAAAGCGTCGAAGCATTCCAACTGACATGGATTCAGAAACGGTTGCATATGCTTTAGCAGCAGCAATAGCCC AAATAAACATTGCCTTAATTAATAAGAAAACGGCTTACGAAGCGGAAGGCATTACATCAGCAAGTGATGTTCCAGGGCAG CCAATGATAGATAACAAAAACTTATTGGTGATCTTGTATGAGAAATCGGTATTTGCCAGAGCTAAAGCAGATTTAATCCC TGAGTTCGCCATGGTGCAAACCAAAGATGCCGGTGATCGAGTTGCAGAGAATGAAACCTTAATTACGGAACGTTTATTAG CAGAAAGCCAACAACATATTAGAGCTATTTTTGGTAAGAGCCGAGTAGGGGTTGAATTGCTATGA
Upstream 100 bases:
>100_bases TTTTTTGGGCATTGGTTTTCTGCGTTGATGGCTTTGATTTATGTTCTTGGAATTTCTTATTTACATTCTCAACTAAGAAA AATCCATAAGGAAGAATCAA
Downstream 100 bases:
>100_bases GTGAGATTCAAAGTCAGCCACAAGCAGGCTTTATGCTGCAAGGGCTTAATCAGCACCTAAGTAATACAACACCAGAGCGC TTGCATAAACACTTTGAATG
Product: head completion/stabilization protein
Products: NA
Alternate protein names: Head Completion Protein; Head Completion/Stabilization Protein; Head Completion/Stabilization Protein Bacteriophage Origin; Prophage; Phage Gene; Phage Head Completion
Number of amino acids: Translated: 154; Mature: 154
Protein sequence:
>154_residues MFSGSSGADYQDTVIENDGFWPNLNAGDFEKRRSIPTDMDSETVAYALAAAIAQINIALINKKTAYEAEGITSASDVPGQ PMIDNKNLLVILYEKSVFARAKADLIPEFAMVQTKDAGDRVAENETLITERLLAESQQHIRAIFGKSRVGVELL
Sequences:
>Translated_154_residues MFSGSSGADYQDTVIENDGFWPNLNAGDFEKRRSIPTDMDSETVAYALAAAIAQINIALINKKTAYEAEGITSASDVPGQ PMIDNKNLLVILYEKSVFARAKADLIPEFAMVQTKDAGDRVAENETLITERLLAESQQHIRAIFGKSRVGVELL >Mature_154_residues MFSGSSGADYQDTVIENDGFWPNLNAGDFEKRRSIPTDMDSETVAYALAAAIAQINIALINKKTAYEAEGITSASDVPGQ PMIDNKNLLVILYEKSVFARAKADLIPEFAMVQTKDAGDRVAENETLITERLLAESQQHIRAIFGKSRVGVELL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16839; Mature: 16839
Theoretical pI: Translated: 4.38; Mature: 4.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSGSSGADYQDTVIENDGFWPNLNAGDFEKRRSIPTDMDSETVAYALAAAIAQINIALI CCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEE NKKTAYEAEGITSASDVPGQPMIDNKNLLVILYEKSVFARAKADLIPEFAMVQTKDAGDR CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEECCCCCH VAENETLITERLLAESQQHIRAIFGKSRVGVELL HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEC >Mature Secondary Structure MFSGSSGADYQDTVIENDGFWPNLNAGDFEKRRSIPTDMDSETVAYALAAAIAQINIALI CCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEE NKKTAYEAEGITSASDVPGQPMIDNKNLLVILYEKSVFARAKADLIPEFAMVQTKDAGDR CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEECCCCCH VAENETLITERLLAESQQHIRAIFGKSRVGVELL HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA