Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694593

Identifier: 209694593

GI number: 209694593

Start: 1128396

End: 1128920

Strand: Direct

Name: 209694593

Synonym: VSAL_I1032

Alternate gene names: NA

Gene position: 1128396-1128920 (Clockwise)

Preceding gene: 209694592

Following gene: 209694594

Centisome position: 33.94

GC content: 41.52

Gene sequence:

>525_bases
ATGAGTGAGATTCAAAGTCAGCCACAAGCAGGCTTTATGCTGCAAGGGCTTAATCAGCACCTAAGTAATACAACACCAGA
GCGCTTGCATAAACACTTTGAATGTTGGATGGAAGATGTAGAGCTGACTCTACAACCAAAAAATCAGGGACAAGGTTTTG
ATATCGGCTACATGCAATACACCGCTGTATTTAGCTTTGAGAAGTTCCCATTTAAAAAAGTAAATCCGGCAACCGTGATG
GTTAATGTGTTGGCGTGGCTCGATGACAATGATGAGTTCAGAGAAAAGTTTAATTTGGCGGAGCCTAGTTTTGATGTCGA
ACCAGAAAACGACGATACGGTGATCATGACATTAGAGGTGGAATTGATAGAGCCATTAATGGTGATTGAAGATCCTGATG
GTGAAATTGTATGGCGTGGTAAGCGTTGGATTAATGCCCCGTATGAGATTTGGGAAGCTGAGCATATTTCAGTAATTAAC
GCGAATAACCCACCAAGTCCGGTGATTACTGATGATCAAAATTAA

Upstream 100 bases:

>100_bases
TTGCAGAGAATGAAACCTTAATTACGGAACGTTTATTAGCAGAAAGCCAACAACATATTAGAGCTATTTTTGGTAAGAGC
CGAGTAGGGGTTGAATTGCT

Downstream 100 bases:

>100_bases
TGTTGATAAGAAATCAGAGCAAGGGGTTTTAGATTCCCTAAAGCTGATGACACTAACCAAACCGAAGCGTCGAAGAATAC
TCAATAAAACAGCAAAGGCT

Product: phage protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MSEIQSQPQAGFMLQGLNQHLSNTTPERLHKHFECWMEDVELTLQPKNQGQGFDIGYMQYTAVFSFEKFPFKKVNPATVM
VNVLAWLDDNDEFREKFNLAEPSFDVEPENDDTVIMTLEVELIEPLMVIEDPDGEIVWRGKRWINAPYEIWEAEHISVIN
ANNPPSPVITDDQN

Sequences:

>Translated_174_residues
MSEIQSQPQAGFMLQGLNQHLSNTTPERLHKHFECWMEDVELTLQPKNQGQGFDIGYMQYTAVFSFEKFPFKKVNPATVM
VNVLAWLDDNDEFREKFNLAEPSFDVEPENDDTVIMTLEVELIEPLMVIEDPDGEIVWRGKRWINAPYEIWEAEHISVIN
ANNPPSPVITDDQN
>Mature_173_residues
SEIQSQPQAGFMLQGLNQHLSNTTPERLHKHFECWMEDVELTLQPKNQGQGFDIGYMQYTAVFSFEKFPFKKVNPATVMV
NVLAWLDDNDEFREKFNLAEPSFDVEPENDDTVIMTLEVELIEPLMVIEDPDGEIVWRGKRWINAPYEIWEAEHISVINA
NNPPSPVITDDQN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20142; Mature: 20011

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEIQSQPQAGFMLQGLNQHLSNTTPERLHKHFECWMEDVELTLQPKNQGQGFDIGYMQY
CCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCEEHHEEE
TAVFSFEKFPFKKVNPATVMVNVLAWLDDNDEFREKFNLAEPSFDVEPENDDTVIMTLEV
EEEEECCCCCCCCCCHHHHEEEEHHHCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEEE
ELIEPLMVIEDPDGEIVWRGKRWINAPYEIWEAEHISVINANNPPSPVITDDQN
EECCCEEEEECCCCCEEEECCEEECCCHHHCCCCEEEEEECCCCCCCCEECCCC
>Mature Secondary Structure 
SEIQSQPQAGFMLQGLNQHLSNTTPERLHKHFECWMEDVELTLQPKNQGQGFDIGYMQY
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCEEHHEEE
TAVFSFEKFPFKKVNPATVMVNVLAWLDDNDEFREKFNLAEPSFDVEPENDDTVIMTLEV
EEEEECCCCCCCCCCHHHHEEEEHHHCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEEE
ELIEPLMVIEDPDGEIVWRGKRWINAPYEIWEAEHISVINANNPPSPVITDDQN
EECCCEEEEECCCCCEEEECCEEECCCHHHCCCCEEEEEECCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA