| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694587
Identifier: 209694587
GI number: 209694587
Start: 1122899
End: 1124671
Strand: Reverse
Name: 209694587
Synonym: VSAL_I1026
Alternate gene names: NA
Gene position: 1124671-1122899 (Counterclockwise)
Preceding gene: 209694616
Following gene: 209694586
Centisome position: 33.82
GC content: 40.83
Gene sequence:
>1773_bases ATGGCATATTCAGATGAAATCAAAGAGGCCGCGAAAAAGCTTTATTTACGCGGATTACCTCCAAAAGAAATAGCGGCACA TCTTAGTTTAAATAGTGACCGTATTATTTATACCTGGGCGGAGAAATTCGGCTGGGCTTTGTTGTTGAATGAACTTTCTG TTGAGGAAATGATTAATCGCCGTTTAGCGGTTTTGATAGATAAAGACGAAAAAAGCGATCAGCAACTTAAAGAGATGGAT AAGTTAATTGACCATCACGTTAAGTTATTAAAAGCCATGGGCGATGCAAAAGCTAAAGCTGAAAGAATGCTTTCGCAAGG CAGCTCGAAAGACAACGATTCAGGATCATCCAATCAAGGCCGAGGCAGTAACAAGAAGAAGGGCAAAGGCAAAAATAATA TAGAGCACCTAACTGAAGGTGACTTTGTAGATTGGCATGAATCTCTATTTGAATACCAACACGTAATGCGCAACAACATT AAACAGCGTATTCGTAATATTCTTAAATCTCGTCAAATTGGTGCAACCTATTATTTCAGCGGTGAAGCATTAGAAGACGC AATTCTTACTGGGGATAATCAAATATTCCTTTCAGCCTCTCGCGCCCAAGCGGAGGTTTTTCGTAGCTACATTATTGCTA TCGGTAAAGAGTTTTTAGATATCGAATTAACAGGCAACCCAATCACTCTATCTAACGGTGCCGAACTTCGATTTTTATCA ACCAACAGCAAAACCGCGCAAAGTTATCACGGCCATGTTTATGTTGATGAATATTTCTGGATACCTAAATTTGATGAGCT TAATAAACTGGCTTCGGCCATGGCTACGCATAAAAAATGGCGCAAGACGTATTTCTCAACCCCATCATCAAAAATGCATC AGGCTTATCCTTTCTGGACTGGTGATTCATGGAAAAAAGGCAAAGCATCTCGTGAAAAATTAGAGTTTCCAACCTTTGCA GAGTTTCGTGATGGCGGCAGACTTTGTGATGATAAGCAATGGCGTTATGTTGTCACGATTGAAGATGCCGCCAATGGCGG CTGTGATTTATTCGACATTGACGAACTTCGTGAAGAATACAGCGTTGACGATTTCAACAACTTATTTATGTGCATGTTTG TTGATGGTTCTCTTTCTGTATTTAAATTTTCTGACCTTGAAAAAGGCATGGTCGATGCCGCTCACTGGCAAGATTTTAAA CCAAAGAATAAACAACCGTTTGAACATCGTGAAGTGTGGCTAGGTTATGACCCAAGCCGAACGCGTGATAATGCGTGTTT GGTTGTTGTTGCTCCACCCGCTGTTGTAGTTGAAAAATTCCGCGTATTAGAAAAACACTATTGGAAAGGACTCAACTTTC AATATCACGTTTCAGAAATAGATAAAGTATTTAAACGTTACAAGGTGACATACATCGGCGTAGATACCACAGGTATTGGT GGCGGTGTTTGGGATTTGATAAGTAAAAAATACCCGCGTGAAGCTCACGCTATTCACTACAGCAACGAAAACAAAAACCG ACTAGTAATGAAAATGATTGATGTTGTTGAAGCCAACCGACTTCAATTTGATGCAGAGCATAAAGACATTGCCATGGCAT TCATGTCAATTAAACGAGTACCTACCTCAAGCGGTAACGCGATGACATTTAAAGCTGAACGAAACCAAACCACAGGCCAT GCCGACGCCTTCTGGGCAATCTCGCACGCAATCATAAACGAGCCATTGGATCACTCATCACCAACCAAATCAACGTGGGA AACCGCAAAATGA
Upstream 100 bases:
>100_bases TCAGCCACTTCAATTCCTGATAATTCGGATATTTGCCCTATCCGAATTCATCCGAATTTCACTTAGCTATTTTCGGTTTT TCGAGGGGTATGATGCAGTT
Downstream 100 bases:
>100_bases CCGAGCAAGCAAACACTTTAGTAACACAAGATAAACCAAAAGACGATTCGGTTTATCATATCGACTCATCACCCGAGGCT GTTGATGCAAGCAGTTGGAT
Product: terminase, ATPase subunit
Products: NA
Alternate protein names: Phage Terminase ATPase Subunit; Terminase; Phage-Related Terminase ATPase Subunit; Terminase Related Protein; Bacteriophage Terminase; Orf16-Like Phage Protein; Phage Terminase ATPase Subunit P; Mu-Like Prophage FluMu Protein Gp; Prophage; ATPase Subunit Of Terminase; Phage Gene; Terminase Subunit; Phage P2 Terminase ATPase Subunit GpP-Like Protein; Bacteriophage Terminase Large Subunit; Prophage Large Terminase Protein; Fels-2 Prophage Protein; Phage Terminase Subunit GpP; Terminase Large Subunit; DNA-Dependent ATPase Terminase Subunit; Terminase ATPase Subunit Bacteriophage Origin; Bacteriophage P2 GPP Capsid Protein; Phage Terminase Subunit; Phage-Related Terminase
Number of amino acids: Translated: 590; Mature: 589
Protein sequence:
>590_residues MAYSDEIKEAAKKLYLRGLPPKEIAAHLSLNSDRIIYTWAEKFGWALLLNELSVEEMINRRLAVLIDKDEKSDQQLKEMD KLIDHHVKLLKAMGDAKAKAERMLSQGSSKDNDSGSSNQGRGSNKKKGKGKNNIEHLTEGDFVDWHESLFEYQHVMRNNI KQRIRNILKSRQIGATYYFSGEALEDAILTGDNQIFLSASRAQAEVFRSYIIAIGKEFLDIELTGNPITLSNGAELRFLS TNSKTAQSYHGHVYVDEYFWIPKFDELNKLASAMATHKKWRKTYFSTPSSKMHQAYPFWTGDSWKKGKASREKLEFPTFA EFRDGGRLCDDKQWRYVVTIEDAANGGCDLFDIDELREEYSVDDFNNLFMCMFVDGSLSVFKFSDLEKGMVDAAHWQDFK PKNKQPFEHREVWLGYDPSRTRDNACLVVVAPPAVVVEKFRVLEKHYWKGLNFQYHVSEIDKVFKRYKVTYIGVDTTGIG GGVWDLISKKYPREAHAIHYSNENKNRLVMKMIDVVEANRLQFDAEHKDIAMAFMSIKRVPTSSGNAMTFKAERNQTTGH ADAFWAISHAIINEPLDHSSPTKSTWETAK
Sequences:
>Translated_590_residues MAYSDEIKEAAKKLYLRGLPPKEIAAHLSLNSDRIIYTWAEKFGWALLLNELSVEEMINRRLAVLIDKDEKSDQQLKEMD KLIDHHVKLLKAMGDAKAKAERMLSQGSSKDNDSGSSNQGRGSNKKKGKGKNNIEHLTEGDFVDWHESLFEYQHVMRNNI KQRIRNILKSRQIGATYYFSGEALEDAILTGDNQIFLSASRAQAEVFRSYIIAIGKEFLDIELTGNPITLSNGAELRFLS TNSKTAQSYHGHVYVDEYFWIPKFDELNKLASAMATHKKWRKTYFSTPSSKMHQAYPFWTGDSWKKGKASREKLEFPTFA EFRDGGRLCDDKQWRYVVTIEDAANGGCDLFDIDELREEYSVDDFNNLFMCMFVDGSLSVFKFSDLEKGMVDAAHWQDFK PKNKQPFEHREVWLGYDPSRTRDNACLVVVAPPAVVVEKFRVLEKHYWKGLNFQYHVSEIDKVFKRYKVTYIGVDTTGIG GGVWDLISKKYPREAHAIHYSNENKNRLVMKMIDVVEANRLQFDAEHKDIAMAFMSIKRVPTSSGNAMTFKAERNQTTGH ADAFWAISHAIINEPLDHSSPTKSTWETAK >Mature_589_residues AYSDEIKEAAKKLYLRGLPPKEIAAHLSLNSDRIIYTWAEKFGWALLLNELSVEEMINRRLAVLIDKDEKSDQQLKEMDK LIDHHVKLLKAMGDAKAKAERMLSQGSSKDNDSGSSNQGRGSNKKKGKGKNNIEHLTEGDFVDWHESLFEYQHVMRNNIK QRIRNILKSRQIGATYYFSGEALEDAILTGDNQIFLSASRAQAEVFRSYIIAIGKEFLDIELTGNPITLSNGAELRFLST NSKTAQSYHGHVYVDEYFWIPKFDELNKLASAMATHKKWRKTYFSTPSSKMHQAYPFWTGDSWKKGKASREKLEFPTFAE FRDGGRLCDDKQWRYVVTIEDAANGGCDLFDIDELREEYSVDDFNNLFMCMFVDGSLSVFKFSDLEKGMVDAAHWQDFKP KNKQPFEHREVWLGYDPSRTRDNACLVVVAPPAVVVEKFRVLEKHYWKGLNFQYHVSEIDKVFKRYKVTYIGVDTTGIGG GVWDLISKKYPREAHAIHYSNENKNRLVMKMIDVVEANRLQFDAEHKDIAMAFMSIKRVPTSSGNAMTFKAERNQTTGHA DAFWAISHAIINEPLDHSSPTKSTWETAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67694; Mature: 67563
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYSDEIKEAAKKLYLRGLPPKEIAAHLSLNSDRIIYTWAEKFGWALLLNELSVEEMINR CCCHHHHHHHHHHHHHCCCCHHHHHHHEECCCCEEEEEEHHHCCHHHHHHHCCHHHHHCC RLAVLIDKDEKSDQQLKEMDKLIDHHVKLLKAMGDAKAKAERMLSQGSSKDNDSGSSNQG CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCC RGSNKKKGKGKNNIEHLTEGDFVDWHESLFEYQHVMRNNIKQRIRNILKSRQIGATYYFS CCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC GEALEDAILTGDNQIFLSASRAQAEVFRSYIIAIGKEFLDIELTGNPITLSNGAELRFLS CCHHHHHHEECCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCEEEEEE TNSKTAQSYHGHVYVDEYFWIPKFDELNKLASAMATHKKWRKTYFSTPSSKMHQAYPFWT CCCCCHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCC GDSWKKGKASREKLEFPTFAEFRDGGRLCDDKQWRYVVTIEDAANGGCDLFDIDELREEY CCCCCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCEEEHHHHHHHC SVDDFNNLFMCMFVDGSLSVFKFSDLEKGMVDAAHWQDFKPKNKQPFEHREVWLGYDPSR CCCCCCCEEEEEEECCCCEEEEECCHHHCCHHHHHCCCCCCCCCCCCCCCCEEECCCCCC TRDNACLVVVAPPAVVVEKFRVLEKHYWKGLNFQYHVSEIDKVFKRYKVTYIGVDTTGIG CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHEEEEEEEECCCCC GGVWDLISKKYPREAHAIHYSNENKNRLVMKMIDVVEANRLQFDAEHKDIAMAFMSIKRV CHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHCC PTSSGNAMTFKAERNQTTGHADAFWAISHAIINEPLDHSSPTKSTWETAK CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure AYSDEIKEAAKKLYLRGLPPKEIAAHLSLNSDRIIYTWAEKFGWALLLNELSVEEMINR CCHHHHHHHHHHHHHCCCCHHHHHHHEECCCCEEEEEEHHHCCHHHHHHHCCHHHHHCC RLAVLIDKDEKSDQQLKEMDKLIDHHVKLLKAMGDAKAKAERMLSQGSSKDNDSGSSNQG CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCC RGSNKKKGKGKNNIEHLTEGDFVDWHESLFEYQHVMRNNIKQRIRNILKSRQIGATYYFS CCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC GEALEDAILTGDNQIFLSASRAQAEVFRSYIIAIGKEFLDIELTGNPITLSNGAELRFLS CCHHHHHHEECCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCEEEEEE TNSKTAQSYHGHVYVDEYFWIPKFDELNKLASAMATHKKWRKTYFSTPSSKMHQAYPFWT CCCCCHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCC GDSWKKGKASREKLEFPTFAEFRDGGRLCDDKQWRYVVTIEDAANGGCDLFDIDELREEY CCCCCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCEEEHHHHHHHC SVDDFNNLFMCMFVDGSLSVFKFSDLEKGMVDAAHWQDFKPKNKQPFEHREVWLGYDPSR CCCCCCCEEEEEEECCCCEEEEECCHHHCCHHHHHCCCCCCCCCCCCCCCCEEECCCCCC TRDNACLVVVAPPAVVVEKFRVLEKHYWKGLNFQYHVSEIDKVFKRYKVTYIGVDTTGIG CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHEEEEEEEECCCCC GGVWDLISKKYPREAHAIHYSNENKNRLVMKMIDVVEANRLQFDAEHKDIAMAFMSIKRV CHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHCC PTSSGNAMTFKAERNQTTGHADAFWAISHAIINEPLDHSSPTKSTWETAK CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA