Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694587

Identifier: 209694587

GI number: 209694587

Start: 1122899

End: 1124671

Strand: Reverse

Name: 209694587

Synonym: VSAL_I1026

Alternate gene names: NA

Gene position: 1124671-1122899 (Counterclockwise)

Preceding gene: 209694616

Following gene: 209694586

Centisome position: 33.82

GC content: 40.83

Gene sequence:

>1773_bases
ATGGCATATTCAGATGAAATCAAAGAGGCCGCGAAAAAGCTTTATTTACGCGGATTACCTCCAAAAGAAATAGCGGCACA
TCTTAGTTTAAATAGTGACCGTATTATTTATACCTGGGCGGAGAAATTCGGCTGGGCTTTGTTGTTGAATGAACTTTCTG
TTGAGGAAATGATTAATCGCCGTTTAGCGGTTTTGATAGATAAAGACGAAAAAAGCGATCAGCAACTTAAAGAGATGGAT
AAGTTAATTGACCATCACGTTAAGTTATTAAAAGCCATGGGCGATGCAAAAGCTAAAGCTGAAAGAATGCTTTCGCAAGG
CAGCTCGAAAGACAACGATTCAGGATCATCCAATCAAGGCCGAGGCAGTAACAAGAAGAAGGGCAAAGGCAAAAATAATA
TAGAGCACCTAACTGAAGGTGACTTTGTAGATTGGCATGAATCTCTATTTGAATACCAACACGTAATGCGCAACAACATT
AAACAGCGTATTCGTAATATTCTTAAATCTCGTCAAATTGGTGCAACCTATTATTTCAGCGGTGAAGCATTAGAAGACGC
AATTCTTACTGGGGATAATCAAATATTCCTTTCAGCCTCTCGCGCCCAAGCGGAGGTTTTTCGTAGCTACATTATTGCTA
TCGGTAAAGAGTTTTTAGATATCGAATTAACAGGCAACCCAATCACTCTATCTAACGGTGCCGAACTTCGATTTTTATCA
ACCAACAGCAAAACCGCGCAAAGTTATCACGGCCATGTTTATGTTGATGAATATTTCTGGATACCTAAATTTGATGAGCT
TAATAAACTGGCTTCGGCCATGGCTACGCATAAAAAATGGCGCAAGACGTATTTCTCAACCCCATCATCAAAAATGCATC
AGGCTTATCCTTTCTGGACTGGTGATTCATGGAAAAAAGGCAAAGCATCTCGTGAAAAATTAGAGTTTCCAACCTTTGCA
GAGTTTCGTGATGGCGGCAGACTTTGTGATGATAAGCAATGGCGTTATGTTGTCACGATTGAAGATGCCGCCAATGGCGG
CTGTGATTTATTCGACATTGACGAACTTCGTGAAGAATACAGCGTTGACGATTTCAACAACTTATTTATGTGCATGTTTG
TTGATGGTTCTCTTTCTGTATTTAAATTTTCTGACCTTGAAAAAGGCATGGTCGATGCCGCTCACTGGCAAGATTTTAAA
CCAAAGAATAAACAACCGTTTGAACATCGTGAAGTGTGGCTAGGTTATGACCCAAGCCGAACGCGTGATAATGCGTGTTT
GGTTGTTGTTGCTCCACCCGCTGTTGTAGTTGAAAAATTCCGCGTATTAGAAAAACACTATTGGAAAGGACTCAACTTTC
AATATCACGTTTCAGAAATAGATAAAGTATTTAAACGTTACAAGGTGACATACATCGGCGTAGATACCACAGGTATTGGT
GGCGGTGTTTGGGATTTGATAAGTAAAAAATACCCGCGTGAAGCTCACGCTATTCACTACAGCAACGAAAACAAAAACCG
ACTAGTAATGAAAATGATTGATGTTGTTGAAGCCAACCGACTTCAATTTGATGCAGAGCATAAAGACATTGCCATGGCAT
TCATGTCAATTAAACGAGTACCTACCTCAAGCGGTAACGCGATGACATTTAAAGCTGAACGAAACCAAACCACAGGCCAT
GCCGACGCCTTCTGGGCAATCTCGCACGCAATCATAAACGAGCCATTGGATCACTCATCACCAACCAAATCAACGTGGGA
AACCGCAAAATGA

Upstream 100 bases:

>100_bases
TCAGCCACTTCAATTCCTGATAATTCGGATATTTGCCCTATCCGAATTCATCCGAATTTCACTTAGCTATTTTCGGTTTT
TCGAGGGGTATGATGCAGTT

Downstream 100 bases:

>100_bases
CCGAGCAAGCAAACACTTTAGTAACACAAGATAAACCAAAAGACGATTCGGTTTATCATATCGACTCATCACCCGAGGCT
GTTGATGCAAGCAGTTGGAT

Product: terminase, ATPase subunit

Products: NA

Alternate protein names: Phage Terminase ATPase Subunit; Terminase; Phage-Related Terminase ATPase Subunit; Terminase Related Protein; Bacteriophage Terminase; Orf16-Like Phage Protein; Phage Terminase ATPase Subunit P; Mu-Like Prophage FluMu Protein Gp; Prophage; ATPase Subunit Of Terminase; Phage Gene; Terminase Subunit; Phage P2 Terminase ATPase Subunit GpP-Like Protein; Bacteriophage Terminase Large Subunit; Prophage Large Terminase Protein; Fels-2 Prophage Protein; Phage Terminase Subunit GpP; Terminase Large Subunit; DNA-Dependent ATPase Terminase Subunit; Terminase ATPase Subunit Bacteriophage Origin; Bacteriophage P2 GPP Capsid Protein; Phage Terminase Subunit; Phage-Related Terminase

Number of amino acids: Translated: 590; Mature: 589

Protein sequence:

>590_residues
MAYSDEIKEAAKKLYLRGLPPKEIAAHLSLNSDRIIYTWAEKFGWALLLNELSVEEMINRRLAVLIDKDEKSDQQLKEMD
KLIDHHVKLLKAMGDAKAKAERMLSQGSSKDNDSGSSNQGRGSNKKKGKGKNNIEHLTEGDFVDWHESLFEYQHVMRNNI
KQRIRNILKSRQIGATYYFSGEALEDAILTGDNQIFLSASRAQAEVFRSYIIAIGKEFLDIELTGNPITLSNGAELRFLS
TNSKTAQSYHGHVYVDEYFWIPKFDELNKLASAMATHKKWRKTYFSTPSSKMHQAYPFWTGDSWKKGKASREKLEFPTFA
EFRDGGRLCDDKQWRYVVTIEDAANGGCDLFDIDELREEYSVDDFNNLFMCMFVDGSLSVFKFSDLEKGMVDAAHWQDFK
PKNKQPFEHREVWLGYDPSRTRDNACLVVVAPPAVVVEKFRVLEKHYWKGLNFQYHVSEIDKVFKRYKVTYIGVDTTGIG
GGVWDLISKKYPREAHAIHYSNENKNRLVMKMIDVVEANRLQFDAEHKDIAMAFMSIKRVPTSSGNAMTFKAERNQTTGH
ADAFWAISHAIINEPLDHSSPTKSTWETAK

Sequences:

>Translated_590_residues
MAYSDEIKEAAKKLYLRGLPPKEIAAHLSLNSDRIIYTWAEKFGWALLLNELSVEEMINRRLAVLIDKDEKSDQQLKEMD
KLIDHHVKLLKAMGDAKAKAERMLSQGSSKDNDSGSSNQGRGSNKKKGKGKNNIEHLTEGDFVDWHESLFEYQHVMRNNI
KQRIRNILKSRQIGATYYFSGEALEDAILTGDNQIFLSASRAQAEVFRSYIIAIGKEFLDIELTGNPITLSNGAELRFLS
TNSKTAQSYHGHVYVDEYFWIPKFDELNKLASAMATHKKWRKTYFSTPSSKMHQAYPFWTGDSWKKGKASREKLEFPTFA
EFRDGGRLCDDKQWRYVVTIEDAANGGCDLFDIDELREEYSVDDFNNLFMCMFVDGSLSVFKFSDLEKGMVDAAHWQDFK
PKNKQPFEHREVWLGYDPSRTRDNACLVVVAPPAVVVEKFRVLEKHYWKGLNFQYHVSEIDKVFKRYKVTYIGVDTTGIG
GGVWDLISKKYPREAHAIHYSNENKNRLVMKMIDVVEANRLQFDAEHKDIAMAFMSIKRVPTSSGNAMTFKAERNQTTGH
ADAFWAISHAIINEPLDHSSPTKSTWETAK
>Mature_589_residues
AYSDEIKEAAKKLYLRGLPPKEIAAHLSLNSDRIIYTWAEKFGWALLLNELSVEEMINRRLAVLIDKDEKSDQQLKEMDK
LIDHHVKLLKAMGDAKAKAERMLSQGSSKDNDSGSSNQGRGSNKKKGKGKNNIEHLTEGDFVDWHESLFEYQHVMRNNIK
QRIRNILKSRQIGATYYFSGEALEDAILTGDNQIFLSASRAQAEVFRSYIIAIGKEFLDIELTGNPITLSNGAELRFLST
NSKTAQSYHGHVYVDEYFWIPKFDELNKLASAMATHKKWRKTYFSTPSSKMHQAYPFWTGDSWKKGKASREKLEFPTFAE
FRDGGRLCDDKQWRYVVTIEDAANGGCDLFDIDELREEYSVDDFNNLFMCMFVDGSLSVFKFSDLEKGMVDAAHWQDFKP
KNKQPFEHREVWLGYDPSRTRDNACLVVVAPPAVVVEKFRVLEKHYWKGLNFQYHVSEIDKVFKRYKVTYIGVDTTGIGG
GVWDLISKKYPREAHAIHYSNENKNRLVMKMIDVVEANRLQFDAEHKDIAMAFMSIKRVPTSSGNAMTFKAERNQTTGHA
DAFWAISHAIINEPLDHSSPTKSTWETAK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 67694; Mature: 67563

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSDEIKEAAKKLYLRGLPPKEIAAHLSLNSDRIIYTWAEKFGWALLLNELSVEEMINR
CCCHHHHHHHHHHHHHCCCCHHHHHHHEECCCCEEEEEEHHHCCHHHHHHHCCHHHHHCC
RLAVLIDKDEKSDQQLKEMDKLIDHHVKLLKAMGDAKAKAERMLSQGSSKDNDSGSSNQG
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCC
RGSNKKKGKGKNNIEHLTEGDFVDWHESLFEYQHVMRNNIKQRIRNILKSRQIGATYYFS
CCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
GEALEDAILTGDNQIFLSASRAQAEVFRSYIIAIGKEFLDIELTGNPITLSNGAELRFLS
CCHHHHHHEECCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCEEEEEE
TNSKTAQSYHGHVYVDEYFWIPKFDELNKLASAMATHKKWRKTYFSTPSSKMHQAYPFWT
CCCCCHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCC
GDSWKKGKASREKLEFPTFAEFRDGGRLCDDKQWRYVVTIEDAANGGCDLFDIDELREEY
CCCCCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCEEEHHHHHHHC
SVDDFNNLFMCMFVDGSLSVFKFSDLEKGMVDAAHWQDFKPKNKQPFEHREVWLGYDPSR
CCCCCCCEEEEEEECCCCEEEEECCHHHCCHHHHHCCCCCCCCCCCCCCCCEEECCCCCC
TRDNACLVVVAPPAVVVEKFRVLEKHYWKGLNFQYHVSEIDKVFKRYKVTYIGVDTTGIG
CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHEEEEEEEECCCCC
GGVWDLISKKYPREAHAIHYSNENKNRLVMKMIDVVEANRLQFDAEHKDIAMAFMSIKRV
CHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHCC
PTSSGNAMTFKAERNQTTGHADAFWAISHAIINEPLDHSSPTKSTWETAK
CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AYSDEIKEAAKKLYLRGLPPKEIAAHLSLNSDRIIYTWAEKFGWALLLNELSVEEMINR
CCHHHHHHHHHHHHHCCCCHHHHHHHEECCCCEEEEEEHHHCCHHHHHHHCCHHHHHCC
RLAVLIDKDEKSDQQLKEMDKLIDHHVKLLKAMGDAKAKAERMLSQGSSKDNDSGSSNQG
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCC
RGSNKKKGKGKNNIEHLTEGDFVDWHESLFEYQHVMRNNIKQRIRNILKSRQIGATYYFS
CCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
GEALEDAILTGDNQIFLSASRAQAEVFRSYIIAIGKEFLDIELTGNPITLSNGAELRFLS
CCHHHHHHEECCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCEEEEEE
TNSKTAQSYHGHVYVDEYFWIPKFDELNKLASAMATHKKWRKTYFSTPSSKMHQAYPFWT
CCCCCHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCC
GDSWKKGKASREKLEFPTFAEFRDGGRLCDDKQWRYVVTIEDAANGGCDLFDIDELREEY
CCCCCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCEEEHHHHHHHC
SVDDFNNLFMCMFVDGSLSVFKFSDLEKGMVDAAHWQDFKPKNKQPFEHREVWLGYDPSR
CCCCCCCEEEEEEECCCCEEEEECCHHHCCHHHHHCCCCCCCCCCCCCCCCEEECCCCCC
TRDNACLVVVAPPAVVVEKFRVLEKHYWKGLNFQYHVSEIDKVFKRYKVTYIGVDTTGIG
CCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHEEEEEEEECCCCC
GGVWDLISKKYPREAHAIHYSNENKNRLVMKMIDVVEANRLQFDAEHKDIAMAFMSIKRV
CHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHCC
PTSSGNAMTFKAERNQTTGHADAFWAISHAIINEPLDHSSPTKSTWETAK
CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA