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The map label for this gene is ltrA [H]

Identifier: 209694507

GI number: 209694507

Start: 1037075

End: 1037992

Strand: Reverse

Name: ltrA [H]

Synonym: VSAL_I0939

Alternate gene names: 209694507

Gene position: 1037992-1037075 (Counterclockwise)

Preceding gene: 209694509

Following gene: 209694503

Centisome position: 31.22

GC content: 37.04

Gene sequence:

>918_bases
ATGGACATAAATAAGCTAATTACCCTATTACCAGATATGGCTGCCTTTGTAACCGTGGTGGACTCAGGAAGTTTCAGTAA
AGCTGCGATCATTCTTGATATGACACCATCAGGAGTAAGTCGTCAGGTTTCTCGTCTTGAAAAAGCACTACAAGTGAAGC
TATTAGAAAGAACGACTAGAAAACAAATTCTGACCGTTGCTGGACAAGATACTTATAATTATTGTAAAAACATTGTCGAT
AACGCTCAAGAGGTTGTAAACGTATCTGACAGTAATAACAATAAAATTGAAGGTGAATTAAGGATTGCCACACCGAAAGC
CTTTGGTAATAAAGTGCTGCAACCTCTTCTTCGTATCTTTGTTCATCACTACCCACACATTACTCTCAAGATAAAAGTAA
CCGATCAACCTTGCGATCCTATTCATGACAATCTTGACTTAATTTTCAAACTTACAAATAGTCCTCAAGAAAACTTAGTC
GCTAAAAAACTAGGGGATGTAGATTTGATCCTTTGTGCTTCTCCAGAGTATTTAAAACAAAAAGGAATCCCCAACCATCC
TATGGAATTAAGTGCTTACGACTGTTTATACCTTGGTGAAACTCAACATGATAACCAATGGCTATTTGAGAAAGGTAATG
AGTGCTTAACCATGACGGTTAATGGTCGGTTTATTGTTAACCACACAGAAATGCGATTGGATGCAGTTAAACACCATCTT
GGTATTGGTGTCTTTCCTGACTTTGTTGTAAGAGAAGATCTTACTCATGGGAAGTTAATAGAAGTAATGCCAGATTGGAC
ACTTCAGGGAAATTACACAGGTGAGATCATCATGCAGTTCTTAAGAAGTAATCATATGCCTAATCGGTTGAGAGTATTTA
TTGATTTCATGGTTCAACAATTTAAAACGCAGACATAA

Upstream 100 bases:

>100_bases
TTTCTTTGTGAGATAACATAACTCACATCCTTATTTGCACTAACATACTGGAAACTGATAGGTTAAATAATCCCCTCTTA
AATCAAATCTTTTGTGACTG

Downstream 100 bases:

>100_bases
AAAAAGAGAGCTAATTATTCAGCTCTCTTTATCTCATTCTACCGAATTAACACGTCGCGTGTTACGGACGGTAAACTTTC
ACATTTTTATAGCCATTTTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MDINKLITLLPDMAAFVTVVDSGSFSKAAIILDMTPSGVSRQVSRLEKALQVKLLERTTRKQILTVAGQDTYNYCKNIVD
NAQEVVNVSDSNNNKIEGELRIATPKAFGNKVLQPLLRIFVHHYPHITLKIKVTDQPCDPIHDNLDLIFKLTNSPQENLV
AKKLGDVDLILCASPEYLKQKGIPNHPMELSAYDCLYLGETQHDNQWLFEKGNECLTMTVNGRFIVNHTEMRLDAVKHHL
GIGVFPDFVVREDLTHGKLIEVMPDWTLQGNYTGEIIMQFLRSNHMPNRLRVFIDFMVQQFKTQT

Sequences:

>Translated_305_residues
MDINKLITLLPDMAAFVTVVDSGSFSKAAIILDMTPSGVSRQVSRLEKALQVKLLERTTRKQILTVAGQDTYNYCKNIVD
NAQEVVNVSDSNNNKIEGELRIATPKAFGNKVLQPLLRIFVHHYPHITLKIKVTDQPCDPIHDNLDLIFKLTNSPQENLV
AKKLGDVDLILCASPEYLKQKGIPNHPMELSAYDCLYLGETQHDNQWLFEKGNECLTMTVNGRFIVNHTEMRLDAVKHHL
GIGVFPDFVVREDLTHGKLIEVMPDWTLQGNYTGEIIMQFLRSNHMPNRLRVFIDFMVQQFKTQT
>Mature_305_residues
MDINKLITLLPDMAAFVTVVDSGSFSKAAIILDMTPSGVSRQVSRLEKALQVKLLERTTRKQILTVAGQDTYNYCKNIVD
NAQEVVNVSDSNNNKIEGELRIATPKAFGNKVLQPLLRIFVHHYPHITLKIKVTDQPCDPIHDNLDLIFKLTNSPQENLV
AKKLGDVDLILCASPEYLKQKGIPNHPMELSAYDCLYLGETQHDNQWLFEKGNECLTMTVNGRFIVNHTEMRLDAVKHHL
GIGVFPDFVVREDLTHGKLIEVMPDWTLQGNYTGEIIMQFLRSNHMPNRLRVFIDFMVQQFKTQT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=258, Percent_Identity=32.9457364341085, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=28.7162162162162, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1789440, Length=291, Percent_Identity=29.8969072164948, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1789639, Length=259, Percent_Identity=32.046332046332, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=29.2517006802721, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=24.7422680412371, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787128, Length=293, Percent_Identity=26.962457337884, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1788706, Length=303, Percent_Identity=23.4323432343234, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790011, Length=299, Percent_Identity=23.0769230769231, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786448, Length=297, Percent_Identity=23.5690235690236, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789173, Length=237, Percent_Identity=25.3164556962025, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI157672245, Length=149, Percent_Identity=30.2013422818792, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082132, Length=280, Percent_Identity=25, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34700; Mature: 34700

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDINKLITLLPDMAAFVTVVDSGSFSKAAIILDMTPSGVSRQVSRLEKALQVKLLERTTR
CCHHHHHHHHCCHHHEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
KQILTVAGQDTYNYCKNIVDNAQEVVNVSDSNNNKIEGELRIATPKAFGNKVLQPLLRIF
HHEEEEECCCHHHHHHHHHHCHHHEEECCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHH
VHHYPHITLKIKVTDQPCDPIHDNLDLIFKLTNSPQENLVAKKLGDVDLILCASPEYLKQ
HHHCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCEEEEEECCCHHHHH
KGIPNHPMELSAYDCLYLGETQHDNQWLFEKGNECLTMTVNGRFIVNHTEMRLDAVKHHL
CCCCCCCCCCCCEEEEEECCCCCCCCHHEECCCCEEEEEECCEEEEEHHHHHHHHHHHHC
GIGVFPDFVVREDLTHGKLIEVMPDWTLQGNYTGEIIMQFLRSNHMPNRLRVFIDFMVQQ
CCCCCCHHHHHHCCCCCCEEEECCCCEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
FKTQT
HHCCC
>Mature Secondary Structure
MDINKLITLLPDMAAFVTVVDSGSFSKAAIILDMTPSGVSRQVSRLEKALQVKLLERTTR
CCHHHHHHHHCCHHHEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
KQILTVAGQDTYNYCKNIVDNAQEVVNVSDSNNNKIEGELRIATPKAFGNKVLQPLLRIF
HHEEEEECCCHHHHHHHHHHCHHHEEECCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHH
VHHYPHITLKIKVTDQPCDPIHDNLDLIFKLTNSPQENLVAKKLGDVDLILCASPEYLKQ
HHHCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCEEEEEECCCHHHHH
KGIPNHPMELSAYDCLYLGETQHDNQWLFEKGNECLTMTVNGRFIVNHTEMRLDAVKHHL
CCCCCCCCCCCCEEEEEECCCCCCCCHHEECCCCEEEEEECCEEEEEHHHHHHHHHHHHC
GIGVFPDFVVREDLTHGKLIEVMPDWTLQGNYTGEIIMQFLRSNHMPNRLRVFIDFMVQQ
CCCCCCHHHHHHCCCCCCEEEECCCCEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
FKTQT
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]