| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is yeaZ [H]
Identifier: 209694481
GI number: 209694481
Start: 1009618
End: 1010319
Strand: Reverse
Name: yeaZ [H]
Synonym: VSAL_I0910
Alternate gene names: 209694481
Gene position: 1010319-1009618 (Counterclockwise)
Preceding gene: 209694482
Following gene: 209694480
Centisome position: 30.38
GC content: 43.73
Gene sequence:
>702_bases ATGAGCGTAAAAATTTTAGCGGTAGATACCGCCACTGAAAACTGTTCTGTCGCATTAATCATTGACGGAAAAGTCCATTC TCGAAGTGCAGTGGCACCGCGTGAACACACCATTAAGATTCTTCCGTTTGTGGATGAAGTATTAAAAGAAGCGGGTGTGC GTTTGCAAGATTTAGATGCATTAGCATTTGGACAAGGTCCTGGTAGCTTTACCGGTGTTCGTATTGGTATTGGTATTGCT CAAGGTTTGGCGTTTGGTGCCGATTTACCTATGATAGGTATTTCTACATTAGAAGCAATGGCTCAAGCGGCTTACCGTAT TCATGGTGCAACACAAATTGCAGGCGCAATTGATGCACGAATGAGTGAAGTCTATTTTGGCATGTATCAACGTAATGACG ATGCAACGTGGTCACCACTTGTCTCTGATATGGTTTCAGTTCCGGCTGAATTAGCGGCTAAACTACCAGATCAAACGGGT GAATGGCTAACGGTAGGCACTGGTTGGGATGCTTATCCTGATGCATTAGAGACATTGCCTCTTGAGACAAAGGCGAGTGA TATTCTATACCCTGAAGCTCAGGATATGGCGATACTTGCATTACAAAAATTTGAACAAGGCTTAGCGGTTCCTGTTGAGG AATCAACGCCTGTTTATGTTCGTGATACCGTGACATGGAAAAAATTACCAGGTCGTGAGTAA
Upstream 100 bases:
>100_bases AGAACTCGAGATTTAAAAAATGTGTCTGAATTTTTAGCGAAAGCAGATCAACATAAAAAATTAGAGAAACAAGAAGTTAT TTTAGAAAATTGAGGCACTA
Downstream 100 bases:
>100_bases TCTTTCTATCTCTAACAGCGAGCTTAATTAGCTCGCTGTTATTATTAATTTAAAAGGCCACTATGGTTTCTATTCAGGGT TTACCTCCTGCGCTAATACA
Product: glycoprotease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 233; Mature: 232
Protein sequence:
>233_residues MSVKILAVDTATENCSVALIIDGKVHSRSAVAPREHTIKILPFVDEVLKEAGVRLQDLDALAFGQGPGSFTGVRIGIGIA QGLAFGADLPMIGISTLEAMAQAAYRIHGATQIAGAIDARMSEVYFGMYQRNDDATWSPLVSDMVSVPAELAAKLPDQTG EWLTVGTGWDAYPDALETLPLETKASDILYPEAQDMAILALQKFEQGLAVPVEESTPVYVRDTVTWKKLPGRE
Sequences:
>Translated_233_residues MSVKILAVDTATENCSVALIIDGKVHSRSAVAPREHTIKILPFVDEVLKEAGVRLQDLDALAFGQGPGSFTGVRIGIGIA QGLAFGADLPMIGISTLEAMAQAAYRIHGATQIAGAIDARMSEVYFGMYQRNDDATWSPLVSDMVSVPAELAAKLPDQTG EWLTVGTGWDAYPDALETLPLETKASDILYPEAQDMAILALQKFEQGLAVPVEESTPVYVRDTVTWKKLPGRE >Mature_232_residues SVKILAVDTATENCSVALIIDGKVHSRSAVAPREHTIKILPFVDEVLKEAGVRLQDLDALAFGQGPGSFTGVRIGIGIAQ GLAFGADLPMIGISTLEAMAQAAYRIHGATQIAGAIDARMSEVYFGMYQRNDDATWSPLVSDMVSVPAELAAKLPDQTGE WLTVGTGWDAYPDALETLPLETKASDILYPEAQDMAILALQKFEQGLAVPVEESTPVYVRDTVTWKKLPGRE
Specific function: Unknown
COG id: COG1214
COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M22 family [H]
Homologues:
Organism=Escherichia coli, GI1788109, Length=231, Percent_Identity=52.8138528138528, Blast_Score=254, Evalue=4e-69,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022496 - InterPro: IPR000905 [H]
Pfam domain/function: PF00814 Peptidase_M22 [H]
EC number: NA
Molecular weight: Translated: 25016; Mature: 24885
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVKILAVDTATENCSVALIIDGKVHSRSAVAPREHTIKILPFVDEVLKEAGVRLQDLDA CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCEEECCCE LAFGQGPGSFTGVRIGIGIAQGLAFGADLPMIGISTLEAMAQAAYRIHGATQIAGAIDAR EEECCCCCCCCEEEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH MSEVYFGMYQRNDDATWSPLVSDMVSVPAELAAKLPDQTGEWLTVGTGWDAYPDALETLP HHHHHHHHEECCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCEEEECCCCCCCCHHHHHCC LETKASDILYPEAQDMAILALQKFEQGLAVPVEESTPVYVRDTVTWKKLPGRE CCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCEEEEECEEEECCCCCC >Mature Secondary Structure SVKILAVDTATENCSVALIIDGKVHSRSAVAPREHTIKILPFVDEVLKEAGVRLQDLDA CEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCEEECCCE LAFGQGPGSFTGVRIGIGIAQGLAFGADLPMIGISTLEAMAQAAYRIHGATQIAGAIDAR EEECCCCCCCCEEEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH MSEVYFGMYQRNDDATWSPLVSDMVSVPAELAAKLPDQTGEWLTVGTGWDAYPDALETLP HHHHHHHHEECCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCEEEECCCCCCCCHHHHHCC LETKASDILYPEAQDMAILALQKFEQGLAVPVEESTPVYVRDTVTWKKLPGRE CCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCEEEEECEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]