| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is yaeP [C]
Identifier: 209694474
GI number: 209694474
Start: 1001328
End: 1001546
Strand: Direct
Name: yaeP [C]
Synonym: VSAL_I0900
Alternate gene names: 209694474
Gene position: 1001328-1001546 (Clockwise)
Preceding gene: 209694473
Following gene: 209694475
Centisome position: 30.11
GC content: 38.36
Gene sequence:
>219_bases ATGGAAAGTATTATGAAAGTATACGATTGTTGTGACATGGTTCGTGAACTGTACTCATTAATTGGCAGTGGCGATCAAGG TTATATTCCTCAAGCGATTAACTGTGCAGTTAAATCATTAAACGACATTGCAGCCGACGATTCTCTTCCAAAAGAAACCC GTGAAAAAGCCGCATTTGCTGCTGCAAACTTATTAATTTCTGATTTTGAGGATGCGTAA
Upstream 100 bases:
>100_bases TCCTAAGCTGAAAAACGTTTCCCCTTACGTTTTTCAGCTTTTTTTAATCTATGTTTTCCTTATTTCTCAGTGTAAACTTC ATAACAGTTATCATTTTAAG
Downstream 100 bases:
>100_bases TGACACCTGAAAAAGTCGCTTCAATGGATCCAATTATGTTAATGAGTATCGTTAATATGAAAATTCGTGATGAATTTGGG GATCTTCACTGTTTCGTGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 72; Mature: 72
Protein sequence:
>72_residues MESIMKVYDCCDMVRELYSLIGSGDQGYIPQAINCAVKSLNDIAADDSLPKETREKAAFAAANLLISDFEDA
Sequences:
>Translated_72_residues MESIMKVYDCCDMVRELYSLIGSGDQGYIPQAINCAVKSLNDIAADDSLPKETREKAAFAAANLLISDFEDA >Mature_72_residues MESIMKVYDCCDMVRELYSLIGSGDQGYIPQAINCAVKSLNDIAADDSLPKETREKAAFAAANLLISDFEDA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0253 family [H]
Homologues:
Organism=Escherichia coli, GI48994876, Length=59, Percent_Identity=55.9322033898305, Blast_Score=77, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009624 - ProDom: PD054643 [H]
Pfam domain/function: PF06786 UPF0253 [H]
EC number: NA
Molecular weight: Translated: 7850; Mature: 7850
Theoretical pI: Translated: 3.95; Mature: 3.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.2 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 8.3 %Cys+Met (Translated Protein) 4.2 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 8.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESIMKVYDCCDMVRELYSLIGSGDQGYIPQAINCAVKSLNDIAADDSLPKETREKAAFA CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH AANLLISDFEDA HHHHHHHHCCCC >Mature Secondary Structure MESIMKVYDCCDMVRELYSLIGSGDQGYIPQAINCAVKSLNDIAADDSLPKETREKAAFA CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH AANLLISDFEDA HHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12620739 [H]