| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694475
Identifier: 209694475
GI number: 209694475
Start: 1001546
End: 1001734
Strand: Direct
Name: 209694475
Synonym: VSAL_I0901
Alternate gene names: NA
Gene position: 1001546-1001734 (Clockwise)
Preceding gene: 209694474
Following gene: 209694476
Centisome position: 30.12
GC content: 32.8
Gene sequence:
>189_bases ATGACACCTGAAAAAGTCGCTTCAATGGATCCAATTATGTTAATGAGTATCGTTAATATGAAAATTCGTGATGAATTTGG GGATCTTCACTGTTTCGTGAAATTCTATGAATTAGATCAAGATGCATTAATAAAGAGATTAGCTGACGCTGGTTTCGATT ATTTAGAAGAAGCCAAACAATTCAGATAA
Upstream 100 bases:
>100_bases TAAACGACATTGCAGCCGACGATTCTCTTCCAAAAGAAACCCGTGAAAAAGCCGCATTTGCTGCTGCAAACTTATTAATT TCTGATTTTGAGGATGCGTA
Downstream 100 bases:
>100_bases TCTATTTAACAAGGGAAATTAATATATCGTTTCCCTTTTAATAACACTTCTCGCCTCTCCCTTATTTCCTTGCTTACTTT ATTATTAAATTTATATATTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 62; Mature: 61
Protein sequence:
>62_residues MTPEKVASMDPIMLMSIVNMKIRDEFGDLHCFVKFYELDQDALIKRLADAGFDYLEEAKQFR
Sequences:
>Translated_62_residues MTPEKVASMDPIMLMSIVNMKIRDEFGDLHCFVKFYELDQDALIKRLADAGFDYLEEAKQFR >Mature_61_residues TPEKVASMDPIMLMSIVNMKIRDEFGDLHCFVKFYELDQDALIKRLADAGFDYLEEAKQFR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7276; Mature: 7144
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 8.1 %Met (Translated Protein) 9.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 6.6 %Met (Mature Protein) 8.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPEKVASMDPIMLMSIVNMKIRDEFGDLHCFVKFYELDQDALIKRLADAGFDYLEEAKQ CCCCHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHC FR CC >Mature Secondary Structure TPEKVASMDPIMLMSIVNMKIRDEFGDLHCFVKFYELDQDALIKRLADAGFDYLEEAKQ CCCHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHC FR CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA