Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209693884

Identifier: 209693884

GI number: 209693884

Start: 323139

End: 324506

Strand: Direct

Name: 209693884

Synonym: VSAL_I0276

Alternate gene names: NA

Gene position: 323139-324506 (Clockwise)

Preceding gene: 209693879

Following gene: 209693885

Centisome position: 9.72

GC content: 42.84

Gene sequence:

>1368_bases
GTGATTTTAAAAAACCGATTTGGTAAATATTTAATAATGCATACAGTAATGGCTAATTACACCAATAAAAAAAGAAGCCT
CACGCCAATAGCCGCGGCATTAGCGTGTTGCTATTCGGCTATTACCTTTATGGCAACGCCAGCAATGGCATCCCCTTGGC
TAGAAGCGAATGATCCTTTTTTACGCTCGTCATTACAGGTGTTGTCTGATTCTGGCGTAATATCGTCACCGACCAATCAA
TACCCATTACGATGGTCTCTATTTGGTGATGATATTATCAATAATGATACCTCTCATGATTTGTCAGTGACGCTCGCCCA
AAGAGAAGTGCGATACAGCATGAACTCGGCAAAACTTAATAGAGGCCAAAGCTCAGCTAAATTTGTCGCCAGTAATGAAG
AGGCTCCATCAACTGGGTTCGGCCAATTTAGTAAAGATAAGTGGGGGGCATCTGCCAGCTACGAATATCTTGATACTAGC
TATGCGTTTCGAGTGACGACCAGTTATTCAAACTATCAAGGCGAGGAAGAGATCCGCTGGGATGACTCCTATCTATCACT
TAATCTAGGCGCTTGGTTATTCTCCATCGGAACGGTAGACAGATGGTGGGGGCAAGGTTGGCAACATAACCTAATTCTTG
GGTCTTACGCCAAAGCCGATCCGGATATAAGTGCCAGCTATATTGGAAAAAACAGAGTACTAGGTGTCTGGAATATTGAA
ACTGTCGTTGCGAAACCAGATGACGCCGAATTTAATTACCACAGTGCGACACGTCTTGTATCTAAGCCCTTTTCATTTTT
TGAATATGGATTAACGTATCAAGTCTGGTTCGATAGTAATAACAGTAGCGATTCAGACGACAGCATTAAGCAAGCCGCCG
TCGATGCTAAGTTAACGTTACCATCGATTAACGTCTCTAATGACAGTGCTGAAGAGCAAACCCATGTATATCACAGCGTA
TATGCAGAGCTTGCCTCAACAGAGAACACCACAGAGTTAGGTGCCTTGCTATTAGGTTGGAGTGGCAGTGTTAATATAGA
GGGGCAAACGGTACGGTTAGTACTTGAGTCTCAACAAAGCACCTCTGAGAATGAGGCGTCATTTAACGCTAACTCAAGTT
ATGCTGTAGACAATAGTTATTCTGTTGCGCTCTATGTGCAAATGAGTAATGATCATAATGTAAGCCTGAGTTATCAGCAA
TCTGAATGGGATGATACCCAGAGTAGCCAAAGTAAGACCACTCAAGCCAATTATCGATTGCCAGCCGCTTCAGGCATGGT
GCATTTAGGGCTTGGCTACACACAAATGAAAACCACAACTGACGATGATCAAATTAATGCATCGTTAGGTTACGAATTTA
GATTTTAG

Upstream 100 bases:

>100_bases
ATACCTGCTAGTATTTATATTCACAATAAAAATGCGCTTAAATAAATGCCATGTCTTATATGTATCATTTCTCACATTGC
TGATATAATACTCGCCTTAT

Downstream 100 bases:

>100_bases
CGATTTATCTTAGTTTGACCGACCCTTTTATTTTTTAACTGATTTTTCACAAGTGAATAAATAACAAAATGATGATGAAA
AGAACCCTTACCGCCAGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MILKNRFGKYLIMHTVMANYTNKKRSLTPIAAALACCYSAITFMATPAMASPWLEANDPFLRSSLQVLSDSGVISSPTNQ
YPLRWSLFGDDIINNDTSHDLSVTLAQREVRYSMNSAKLNRGQSSAKFVASNEEAPSTGFGQFSKDKWGASASYEYLDTS
YAFRVTTSYSNYQGEEEIRWDDSYLSLNLGAWLFSIGTVDRWWGQGWQHNLILGSYAKADPDISASYIGKNRVLGVWNIE
TVVAKPDDAEFNYHSATRLVSKPFSFFEYGLTYQVWFDSNNSSDSDDSIKQAAVDAKLTLPSINVSNDSAEEQTHVYHSV
YAELASTENTTELGALLLGWSGSVNIEGQTVRLVLESQQSTSENEASFNANSSYAVDNSYSVALYVQMSNDHNVSLSYQQ
SEWDDTQSSQSKTTQANYRLPAASGMVHLGLGYTQMKTTTDDDQINASLGYEFRF

Sequences:

>Translated_455_residues
MILKNRFGKYLIMHTVMANYTNKKRSLTPIAAALACCYSAITFMATPAMASPWLEANDPFLRSSLQVLSDSGVISSPTNQ
YPLRWSLFGDDIINNDTSHDLSVTLAQREVRYSMNSAKLNRGQSSAKFVASNEEAPSTGFGQFSKDKWGASASYEYLDTS
YAFRVTTSYSNYQGEEEIRWDDSYLSLNLGAWLFSIGTVDRWWGQGWQHNLILGSYAKADPDISASYIGKNRVLGVWNIE
TVVAKPDDAEFNYHSATRLVSKPFSFFEYGLTYQVWFDSNNSSDSDDSIKQAAVDAKLTLPSINVSNDSAEEQTHVYHSV
YAELASTENTTELGALLLGWSGSVNIEGQTVRLVLESQQSTSENEASFNANSSYAVDNSYSVALYVQMSNDHNVSLSYQQ
SEWDDTQSSQSKTTQANYRLPAASGMVHLGLGYTQMKTTTDDDQINASLGYEFRF
>Mature_455_residues
MILKNRFGKYLIMHTVMANYTNKKRSLTPIAAALACCYSAITFMATPAMASPWLEANDPFLRSSLQVLSDSGVISSPTNQ
YPLRWSLFGDDIINNDTSHDLSVTLAQREVRYSMNSAKLNRGQSSAKFVASNEEAPSTGFGQFSKDKWGASASYEYLDTS
YAFRVTTSYSNYQGEEEIRWDDSYLSLNLGAWLFSIGTVDRWWGQGWQHNLILGSYAKADPDISASYIGKNRVLGVWNIE
TVVAKPDDAEFNYHSATRLVSKPFSFFEYGLTYQVWFDSNNSSDSDDSIKQAAVDAKLTLPSINVSNDSAEEQTHVYHSV
YAELASTENTTELGALLLGWSGSVNIEGQTVRLVLESQQSTSENEASFNANSSYAVDNSYSVALYVQMSNDHNVSLSYQQ
SEWDDTQSSQSKTTQANYRLPAASGMVHLGLGYTQMKTTTDDDQINASLGYEFRF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50628; Mature: 50628

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILKNRFGKYLIMHTVMANYTNKKRSLTPIAAALACCYSAITFMATPAMASPWLEANDPF
CCCCHHHCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
LRSSLQVLSDSGVISSPTNQYPLRWSLFGDDIINNDTSHDLSVTLAQREVRYSMNSAKLN
HHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHCCCCCCCEEEEEEHHHHHHHHCHHHCC
RGQSSAKFVASNEEAPSTGFGQFSKDKWGASASYEYLDTSYAFRVTTSYSNYQGEEEIRW
CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCCEEE
DDSYLSLNLGAWLFSIGTVDRWWGQGWQHNLILGSYAKADPDISASYIGKNRVLGVWNIE
CCCEEEEEHHHHEEECCCHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEEEEEE
TVVAKPDDAEFNYHSATRLVSKPFSFFEYGLTYQVWFDSNNSSDSDDSIKQAAVDAKLTL
EEEECCCCCCCCHHHHHHHHHCCHHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCEEEE
PSINVSNDSAEEQTHVYHSVYAELASTENTTELGALLLGWSGSVNIEGQTVRLVLESQQS
CEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHEEEEEECCCCEEECCCEEEEEEECCCC
TSENEASFNANSSYAVDNSYSVALYVQMSNDHNVSLSYQQSEWDDTQSSQSKTTQANYRL
CCCCCCCCCCCCCEEECCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEC
PAASGMVHLGLGYTQMKTTTDDDQINASLGYEFRF
CCCCCEEEECCCEEEEECCCCCCCEEEEECEEECC
>Mature Secondary Structure
MILKNRFGKYLIMHTVMANYTNKKRSLTPIAAALACCYSAITFMATPAMASPWLEANDPF
CCCCHHHCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
LRSSLQVLSDSGVISSPTNQYPLRWSLFGDDIINNDTSHDLSVTLAQREVRYSMNSAKLN
HHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHCCCCCCCEEEEEEHHHHHHHHCHHHCC
RGQSSAKFVASNEEAPSTGFGQFSKDKWGASASYEYLDTSYAFRVTTSYSNYQGEEEIRW
CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCCEEE
DDSYLSLNLGAWLFSIGTVDRWWGQGWQHNLILGSYAKADPDISASYIGKNRVLGVWNIE
CCCEEEEEHHHHEEECCCHHHHHCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEEEEEE
TVVAKPDDAEFNYHSATRLVSKPFSFFEYGLTYQVWFDSNNSSDSDDSIKQAAVDAKLTL
EEEECCCCCCCCHHHHHHHHHCCHHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCEEEE
PSINVSNDSAEEQTHVYHSVYAELASTENTTELGALLLGWSGSVNIEGQTVRLVLESQQS
CEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHEEEEEECCCCEEECCCEEEEEEECCCC
TSENEASFNANSSYAVDNSYSVALYVQMSNDHNVSLSYQQSEWDDTQSSQSKTTQANYRL
CCCCCCCCCCCCCEEECCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEC
PAASGMVHLGLGYTQMKTTTDDDQINASLGYEFRF
CCCCCEEEECCCEEEEECCCCCCCEEEEECEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA