Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209693879

Identifier: 209693879

GI number: 209693879

Start: 317676

End: 318617

Strand: Direct

Name: 209693879

Synonym: VSAL_I0271

Alternate gene names: NA

Gene position: 317676-318617 (Clockwise)

Preceding gene: 209693878

Following gene: 209693884

Centisome position: 9.55

GC content: 32.91

Gene sequence:

>942_bases
ATGCAGAGAATAAATTTAGTTAAAAATTCAAAAAATAAAAAAGTGATTATTGGAACATTTGACGGTGTTGCAGAAAGTAG
TGTCGAAGGCTTTTTAACAGGACAAAGTCAAAAAGGTTCTGGAACAACTAAAACAGAGATAGAAACTTTAAATAATGAAT
ATGTTTTATTGAGTGGTTTTAATGCCGATAATCAAATTACAGGTTTTAACTATCAAGCGAGTTCTGCATTAAGTGATATG
ACGAGTACCAGTACAGCTTCTCATGCATTAGACGCTTTAACTAGCTTTATTAATATTGATTTGAGAGATTCAAGTGATTT
TTCTTTTTTAGATATGACTATTTTTTCAAATTATAAAGGTCAAGTTTTTACTTGGAACTCATGGGCCACTAAGCCATCTA
TTTTTACCTCGTATGCAAAGTTAGGTGATGAATTTAATTATTCAGCAACTTACAAAGGAACATTGAATTCTTGGAAGATC
ACTGTAAACTCGACAGCAAGTGCAACAGGTGATATTTCTATTGTATTAGATTCTCTTGATATGCAAACAATCCCAGCCCC
TGCATTTGAATGTGGTGGCTCAACATGCTATGTGAATGTTAAAACGCTAACCTCGTTAGATGTTGATACGATAAAATTAG
AATATACAGCGGGAGTGACAAGACATACAATCTATACGAATGATAGAGATATGTTTATCCCTGAGATCCCTAGTTATATT
GAAGATGTTACATACCCAGATAGTTTAACTCCTGTAAATGTATCTTTCTTGATGGGTGATAATATTACGAATGAAGCTCG
TTCAGGGTTCATGAGTTACTCAAATATTAAAGAAAATCCTCCTCGTGATGGGTATATTGATATGCTTATTGCTCCAGGAT
TAGAAATGAAACATCAATTAGGAGTTAAACAATCTAATTTCATATCGGTAGTTTCACCATAA

Upstream 100 bases:

>100_bases
TCTATAAAGGATGGTTCTAAGCACTTACTTACAGTTCAAAAAGAATTATTATCAGATGCATTAATTAAAGTAAATGTAGA
ACAAGGTACTCAAAAGTGCT

Downstream 100 bases:

>100_bases
CATATTAAAAAAGAGCGCAGCATCCACTGCGCTCTTTTATAATACACCAAACCAACCGCGATCCGCTTTTAAGCCTCAAC
CCTCAACCCTACACTCACCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MQRINLVKNSKNKKVIIGTFDGVAESSVEGFLTGQSQKGSGTTKTEIETLNNEYVLLSGFNADNQITGFNYQASSALSDM
TSTSTASHALDALTSFINIDLRDSSDFSFLDMTIFSNYKGQVFTWNSWATKPSIFTSYAKLGDEFNYSATYKGTLNSWKI
TVNSTASATGDISIVLDSLDMQTIPAPAFECGGSTCYVNVKTLTSLDVDTIKLEYTAGVTRHTIYTNDRDMFIPEIPSYI
EDVTYPDSLTPVNVSFLMGDNITNEARSGFMSYSNIKENPPRDGYIDMLIAPGLEMKHQLGVKQSNFISVVSP

Sequences:

>Translated_313_residues
MQRINLVKNSKNKKVIIGTFDGVAESSVEGFLTGQSQKGSGTTKTEIETLNNEYVLLSGFNADNQITGFNYQASSALSDM
TSTSTASHALDALTSFINIDLRDSSDFSFLDMTIFSNYKGQVFTWNSWATKPSIFTSYAKLGDEFNYSATYKGTLNSWKI
TVNSTASATGDISIVLDSLDMQTIPAPAFECGGSTCYVNVKTLTSLDVDTIKLEYTAGVTRHTIYTNDRDMFIPEIPSYI
EDVTYPDSLTPVNVSFLMGDNITNEARSGFMSYSNIKENPPRDGYIDMLIAPGLEMKHQLGVKQSNFISVVSP
>Mature_313_residues
MQRINLVKNSKNKKVIIGTFDGVAESSVEGFLTGQSQKGSGTTKTEIETLNNEYVLLSGFNADNQITGFNYQASSALSDM
TSTSTASHALDALTSFINIDLRDSSDFSFLDMTIFSNYKGQVFTWNSWATKPSIFTSYAKLGDEFNYSATYKGTLNSWKI
TVNSTASATGDISIVLDSLDMQTIPAPAFECGGSTCYVNVKTLTSLDVDTIKLEYTAGVTRHTIYTNDRDMFIPEIPSYI
EDVTYPDSLTPVNVSFLMGDNITNEARSGFMSYSNIKENPPRDGYIDMLIAPGLEMKHQLGVKQSNFISVVSP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34350; Mature: 34350

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRINLVKNSKNKKVIIGTFDGVAESSVEGFLTGQSQKGSGTTKTEIETLNNEYVLLSGF
CCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCEEEEECC
NADNQITGFNYQASSALSDMTSTSTASHALDALTSFINIDLRDSSDFSFLDMTIFSNYKG
CCCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHEEEEEECCCCCEEEEEEEECCCCC
QVFTWNSWATKPSIFTSYAKLGDEFNYSATYKGTLNSWKITVNSTASATGDISIVLDSLD
CEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEEECCC
MQTIPAPAFECGGSTCYVNVKTLTSLDVDTIKLEYTAGVTRHTIYTNDRDMFIPEIPSYI
CCCCCCCHHHCCCCEEEEEEEEEEECCCEEEEEEEECCCEEEEEEECCCCEECCCCHHHH
EDVTYPDSLTPVNVSFLMGDNITNEARSGFMSYSNIKENPPRDGYIDMLIAPGLEMKHQL
HHCCCCCCCCCEEEEEEECCCCCHHHHHCCEECCCCCCCCCCCCEEEEEEECCCCHHHHC
GVKQSNFISVVSP
CCCCCCEEEEECC
>Mature Secondary Structure
MQRINLVKNSKNKKVIIGTFDGVAESSVEGFLTGQSQKGSGTTKTEIETLNNEYVLLSGF
CCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCEEEEECC
NADNQITGFNYQASSALSDMTSTSTASHALDALTSFINIDLRDSSDFSFLDMTIFSNYKG
CCCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHEEEEEECCCCCEEEEEEEECCCCC
QVFTWNSWATKPSIFTSYAKLGDEFNYSATYKGTLNSWKITVNSTASATGDISIVLDSLD
CEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEEECCC
MQTIPAPAFECGGSTCYVNVKTLTSLDVDTIKLEYTAGVTRHTIYTNDRDMFIPEIPSYI
CCCCCCCHHHCCCCEEEEEEEEEEECCCEEEEEEEECCCEEEEEEECCCCEECCCCHHHH
EDVTYPDSLTPVNVSFLMGDNITNEARSGFMSYSNIKENPPRDGYIDMLIAPGLEMKHQL
HHCCCCCCCCCEEEEEEECCCCCHHHHHCCEECCCCCCCCCCCCEEEEEEECCCCHHHHC
GVKQSNFISVVSP
CCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA