| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209693818
Identifier: 209693818
GI number: 209693818
Start: 246879
End: 247619
Strand: Direct
Name: 209693818
Synonym: VSAL_I0205
Alternate gene names: NA
Gene position: 246879-247619 (Clockwise)
Preceding gene: 209693815
Following gene: 209693821
Centisome position: 7.42
GC content: 39.41
Gene sequence:
>741_bases ATGTTAGTCGGATATAAACGTGCACAGTGTAAGAAGGTTCTTGTCATCAACCGTAAAGGTGGTGCAGGCAAATCAACCTT TGCAATTGCAATGGCGTCTTTCTACGCTCATCAAAACGTAAAGACTGAAATCATCGATCTTGATCCACAAGGAACCAGTT ATTTTTGGGGAAATAAAAGCGAGGGTGTAAGAACGACTAAATTTTTACCCTCTTCTAACGTGCCTTTCTCTCTCGCATTA CGATTAGAAGCCGACACCAAAATTACGGTGATTGATTCTCCCTCTAATTTCAGTCAATTTGAAATGGAGAAATATATCTC GATGGTGGATAAAATTGTTTTTCCCGTTCAACCCTCACCGATTGATGTTCACTCTATGTTGGGGTTTATTAAGGATTTAA TTAAGTCTCCCGCCTTTAAAAATAACAGAGTTGAATTAGCGTTTGTTATTACTCGCTGCAAAGAAAACAAGCAAGGCACT GAGTTTATTCATAAAGTGCTGCAACACATGAAATACCCGCTATTAGGTAGTATGTCTGAGAGTCAGGCATATCAGAATAT GTTTTCTGAAAAGAACAGTTTTTTGATTAGCCATCCAGAATTAGATAAAGAACTTTGGCAGAGGATGAAGCTGTGGCTTG ATGTCGATATGACGCCACCACAAACACTCGCCCCAGAAACAACAAAAGTGGCTGAGCCGAAGCCAACCACTTATCGTTCT TTACTTAAAAGACGCTATTAA
Upstream 100 bases:
>100_bases CTGCAAATTTTAAGTATAGAATGCAGTACTACTGGTTATTTACATGGCATATTGATTGCTTAGTTAATAGCTTTTCAATA AGTATTGCGGATTCATTTCT
Downstream 100 bases:
>100_bases CCACTTGTTTATGCATTAAGCTATTTGGAATTAAATACCAAATTCTGCACGGTAGGCTTTTACTGACTCAAGTTGCTCAG CATTGCCGCCTTTCTCTTCT
Product: partitioning protein ParA
Products: NA
Alternate protein names: Cobyrinic Acid A C-Diamide Synthase; Partition-Related Protein; Partition Protein; ParA Family Protein; Chromosome Partitioning Protein ParA; CobQ/CobB/MinD/ParA Domain-Containing Protein; Partitioning Protein ParA; Chromosome Partitioning-Related ATPase; Partition Protein ParA; Partition-Like Protein
Number of amino acids: Translated: 246; Mature: 246
Protein sequence:
>246_residues MLVGYKRAQCKKVLVINRKGGAGKSTFAIAMASFYAHQNVKTEIIDLDPQGTSYFWGNKSEGVRTTKFLPSSNVPFSLAL RLEADTKITVIDSPSNFSQFEMEKYISMVDKIVFPVQPSPIDVHSMLGFIKDLIKSPAFKNNRVELAFVITRCKENKQGT EFIHKVLQHMKYPLLGSMSESQAYQNMFSEKNSFLISHPELDKELWQRMKLWLDVDMTPPQTLAPETTKVAEPKPTTYRS LLKRRY
Sequences:
>Translated_246_residues MLVGYKRAQCKKVLVINRKGGAGKSTFAIAMASFYAHQNVKTEIIDLDPQGTSYFWGNKSEGVRTTKFLPSSNVPFSLAL RLEADTKITVIDSPSNFSQFEMEKYISMVDKIVFPVQPSPIDVHSMLGFIKDLIKSPAFKNNRVELAFVITRCKENKQGT EFIHKVLQHMKYPLLGSMSESQAYQNMFSEKNSFLISHPELDKELWQRMKLWLDVDMTPPQTLAPETTKVAEPKPTTYRS LLKRRY >Mature_246_residues MLVGYKRAQCKKVLVINRKGGAGKSTFAIAMASFYAHQNVKTEIIDLDPQGTSYFWGNKSEGVRTTKFLPSSNVPFSLAL RLEADTKITVIDSPSNFSQFEMEKYISMVDKIVFPVQPSPIDVHSMLGFIKDLIKSPAFKNNRVELAFVITRCKENKQGT EFIHKVLQHMKYPLLGSMSESQAYQNMFSEKNSFLISHPELDKELWQRMKLWLDVDMTPPQTLAPETTKVAEPKPTTYRS LLKRRY
Specific function: Unknown
COG id: COG1192
COG function: function code D; ATPases involved in chromosome partitioning
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28137; Mature: 28137
Theoretical pI: Translated: 10.02; Mature: 10.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVGYKRAQCKKVLVINRKGGAGKSTFAIAMASFYAHQNVKTEIIDLDPQGTSYFWGNKS CCCCCCHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCC EGVRTTKFLPSSNVPFSLALRLEADTKITVIDSPSNFSQFEMEKYISMVDKIVFPVQPSP CCCEEEEECCCCCCCEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCC IDVHSMLGFIKDLIKSPAFKNNRVELAFVITRCKENKQGTEFIHKVLQHMKYPLLGSMSE CCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHCCCCCHHHHHHHHHHHCCCCCCCCCHH SQAYQNMFSEKNSFLISHPELDKELWQRMKLWLDVDMTPPQTLAPETTKVAEPKPTTYRS HHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCHHHHH LLKRRY HHHHCC >Mature Secondary Structure MLVGYKRAQCKKVLVINRKGGAGKSTFAIAMASFYAHQNVKTEIIDLDPQGTSYFWGNKS CCCCCCHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCC EGVRTTKFLPSSNVPFSLALRLEADTKITVIDSPSNFSQFEMEKYISMVDKIVFPVQPSP CCCEEEEECCCCCCCEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCC IDVHSMLGFIKDLIKSPAFKNNRVELAFVITRCKENKQGTEFIHKVLQHMKYPLLGSMSE CCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHCCCCCHHHHHHHHHHHCCCCCCCCCHH SQAYQNMFSEKNSFLISHPELDKELWQRMKLWLDVDMTPPQTLAPETTKVAEPKPTTYRS HHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCHHHHH LLKRRY HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA