Click here to switch to the map view.

The map label for this gene is yicC [C]

Identifier: 209693821

GI number: 209693821

Start: 249413

End: 250276

Strand: Direct

Name: yicC [C]

Synonym: VSAL_I0208

Alternate gene names: 209693821

Gene position: 249413-250276 (Clockwise)

Preceding gene: 209693818

Following gene: 209693823

Centisome position: 7.5

GC content: 44.21

Gene sequence:

>864_bases
ATGATCTACAGTATGACAGCTTACGCACGCCGCGAAGTAAAAGGCGATTGGGGAACGGCTGTGTGGGAAATCCGCTCAGT
AAACCAACGCTATTTAGAAACGTATTTCCGCATGCCGGAACAATTTCGTGGTTTAGAACCTGTATTGCGTGAGCGTTTTC
GTAAGCGCCTTGCTCGCGGTAAAGTAGAATGCCACCTACGTTTTGAATCAAACAACGCAGCAAGCAGCGAATTAAAAATC
AATGAAGACCTAGCTCGCCAAGTAATTAAAGCGGCGCAGTGGGTAAAAACTGAATCTGGCGAAGGCGGTATTAACCCTTT
CCAAGTTCTGCAATGGCAAGGTGTGATGGAAGCGCCTGAGCAAGATTTCGATTCAATCAATAAAGAATTATTGGCGGAGT
TTGAATTGGCGGTTAATGATTTCGTTGAAGCGCGTGCAAGCGAAGGCGAAAACATGAAGGCGCTGATCGTTCAGCGTTTA
GATGCGATCACTACCGAAGCTGCGAAAGTTCGTGCACGTATGCCTGAGATTTTAGAATGGCAACGTAACCGTCTTCTGAC
TAAATTTGAAGATGCGAAAATTGAATTAGATTCTGGCCGTGTTGAACAAGAACTTATTCTTCTTGCTCAAAAATCTGACG
TGGCTGAAGAGCTTGATCGTTTAGATTCACACGTTAAAGAAACAACCAATGTAATGAAGAAAGGCGGCGCTTGTGGCCGT
AAGCTTGATTTCATGATGCAAGAATTTAACCGTGAAGCGAATACGCTAGCGTCTAAATCTATCAGCACCGATGTAACAGC
CTCTGGCGTTGAGCTTAAAGTGCTTATCGAACAAATGCGTGAGCAAATTCAGAACATTGAATAA

Upstream 100 bases:

>100_bases
CTTTCATCGACTCTACTTACTTCCTAAAGCGCTTATCTGCTATAGTATGCCCAATATTTTTATTCATCATCCTTCCTATT
GATGATTTGAGGACGCTTAC

Downstream 100 bases:

>100_bases
TCAGTTTTGATTGTTAACCATTAAAAAGGCCTCGTTGATAACTATCTGCGAGGCTTTTTATTTTTCTGCTATACGTTAGT
TATTACTCATCATATTTCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MIYSMTAYARREVKGDWGTAVWEIRSVNQRYLETYFRMPEQFRGLEPVLRERFRKRLARGKVECHLRFESNNAASSELKI
NEDLARQVIKAAQWVKTESGEGGINPFQVLQWQGVMEAPEQDFDSINKELLAEFELAVNDFVEARASEGENMKALIVQRL
DAITTEAAKVRARMPEILEWQRNRLLTKFEDAKIELDSGRVEQELILLAQKSDVAEELDRLDSHVKETTNVMKKGGACGR
KLDFMMQEFNREANTLASKSISTDVTASGVELKVLIEQMREQIQNIE

Sequences:

>Translated_287_residues
MIYSMTAYARREVKGDWGTAVWEIRSVNQRYLETYFRMPEQFRGLEPVLRERFRKRLARGKVECHLRFESNNAASSELKI
NEDLARQVIKAAQWVKTESGEGGINPFQVLQWQGVMEAPEQDFDSINKELLAEFELAVNDFVEARASEGENMKALIVQRL
DAITTEAAKVRARMPEILEWQRNRLLTKFEDAKIELDSGRVEQELILLAQKSDVAEELDRLDSHVKETTNVMKKGGACGR
KLDFMMQEFNREANTLASKSISTDVTASGVELKVLIEQMREQIQNIE
>Mature_287_residues
MIYSMTAYARREVKGDWGTAVWEIRSVNQRYLETYFRMPEQFRGLEPVLRERFRKRLARGKVECHLRFESNNAASSELKI
NEDLARQVIKAAQWVKTESGEGGINPFQVLQWQGVMEAPEQDFDSINKELLAEFELAVNDFVEARASEGENMKALIVQRL
DAITTEAAKVRARMPEILEWQRNRLLTKFEDAKIELDSGRVEQELILLAQKSDVAEELDRLDSHVKETTNVMKKGGACGR
KLDFMMQEFNREANTLASKSISTDVTASGVELKVLIEQMREQIQNIE

Specific function: Unknown

COG id: COG1561

COG function: function code S; Uncharacterized stress-induced protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0701 family [H]

Homologues:

Organism=Escherichia coli, GI1790075, Length=287, Percent_Identity=65.8536585365854, Blast_Score=390, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005229
- InterPro:   IPR013551
- InterPro:   IPR013527 [H]

Pfam domain/function: PF08340 DUF1732; PF03755 YicC_N [H]

EC number: NA

Molecular weight: Translated: 33021; Mature: 33021

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYSMTAYARREVKGDWGTAVWEIRSVNQRYLETYFRMPEQFRGLEPVLRERFRKRLARG
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHCC
KVECHLRFESNNAASSELKINEDLARQVIKAAQWVKTESGEGGINPFQVLQWQGVMEAPE
CEEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHCCCH
QDFDSINKELLAEFELAVNDFVEARASEGENMKALIVQRLDAITTEAAKVRARMPEILEW
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
QRNRLLTKFEDAKIELDSGRVEQELILLAQKSDVAEELDRLDSHVKETTNVMKKGGACGR
HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
KLDFMMQEFNREANTLASKSISTDVTASGVELKVLIEQMREQIQNIE
HHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIYSMTAYARREVKGDWGTAVWEIRSVNQRYLETYFRMPEQFRGLEPVLRERFRKRLARG
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHCC
KVECHLRFESNNAASSELKINEDLARQVIKAAQWVKTESGEGGINPFQVLQWQGVMEAPE
CEEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHCCCH
QDFDSINKELLAEFELAVNDFVEARASEGENMKALIVQRLDAITTEAAKVRARMPEILEW
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
QRNRLLTKFEDAKIELDSGRVEQELILLAQKSDVAEELDRLDSHVKETTNVMKKGGACGR
HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
KLDFMMQEFNREANTLASKSISTDVTASGVELKVLIEQMREQIQNIE
HHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]