| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is fpvA [H]
Identifier: 209693759
GI number: 209693759
Start: 175286
End: 177451
Strand: Direct
Name: fpvA [H]
Synonym: VSAL_I0137
Alternate gene names: 209693759
Gene position: 175286-177451 (Clockwise)
Preceding gene: 209693758
Following gene: 209693760
Centisome position: 5.27
GC content: 40.58
Gene sequence:
>2166_bases ATGACATTGAATACGAACATGACATCACCAAAAATACCGACATACTCACTTTTCTATGGGTTATCTTGTGTTTTAACGTT GCCAGTAATGGCAGAGGACAATGATAACGAGGCAATGGAAGTAATGACCATTACCGCGCATAAACAAGAGATTGCCAGCT ATAAAACAGGTGAAACCTCAACCTCAACAGGGATGGATTTATCCTATTTAGAAACACCACAATCTGTAACTGCCGTGAAC GAACAAGCCATGAAAGATCAACAACTAAACAGTGTTGTTGATGTAATGAACAGCGTATCGAGTGTTTACGCTCGACCTAT GGACAACGACAGATACACCGTCTCTGCTCGTGGTATGGAAGTAAGCACCATTCTTTATGATGGCGTTCCTATCACCTATG ACACCCGTTTCAATTACGGTGATAACCTAATGGATACGGCGATTTATGATCGCGTTGAAGTGGTTCGCGGTGCGAACGGA TTAATGATTGGTGCAGGCGAGCCTTCAGCCTCTATCAACCTTATTAGAAAACGTCCTACTCACGATTTTAATGCCAATGT TAGCGTAGGCACGGGATCTTGGAATTTAAAACGTGGGGTCGTTGATATCTCTGGCAGCGTAAATACTGATGAAAGTATTA GAGCTCGTCTTGTTGCTGTCCATCAAGAACGTGACTCCTACTTAGACAGATACGAACAGAAAAGAAGTACATTATATGGC GTTATTGAGGCCGATTTAACCACCGACACCTTATTAACGGTCGGTACCGATTATCAATATAACGAGCCAAAAGGCACCAT GGCGGGAGGACTTCCCCTCTTTCATAGCGATGGTACGAGAACAAATTACAGCACATCAGCAACCACCGCTCCTGACTGGG CATCCGCTGAAACCACAGCATTAAATTCATTTGTCAGTCTAGAGCATAGCTTTAACCCAGATTGGGTAATAAAAGGAACG TATACCTATGGTGATAACAGCTTAGATTTCAATTATTTATGGCCGAAAGGTTTTCCTGACCCAAATACAAATGAAGGTAT GGTTCCAGGCAGTATTAATTATATTGATGGAAATCGAAAAATTAATAATCTTAACCTAACTCTCAAAGGTCATTTTTCTC TGTTTGGACAAGATCACCAAATGATCGCGGGTTTCAACAATCAAAAAATGACGTTCGAGAATACTTACTATAAAGGGCTA AACGCACAATCAGAGGTCGGTGATTTTACTGACCCAAATTGGTCTTATCCAGAACCGGAATGGAGCAGAGAAAAAAGCTG GGAATCAACAGGAGAAACCAAACAACAAGGGATCTATGTCGCCTCACATATCAATGTAACTGACCAGTGGTCTTTCGTTC TTGGTGGACGATTGAGTGACTGGGAAACCGATATGAATGACTTTGGAACCCTTCATAAAAATAAAATCAGTAATGAATTT ACCTCATACGTTGGGACGACTTATGCAATAACCCCCATTGTTGCGGTATACGCCAGTTACTCTGATATTTTCACACCGCA AAACGTAAAAGGTAAAAATAATACGTATCTCGACCCGATTAAAGGAAAGAACTATGAAACAGGAATTAAAGCAAGCCTCT TGGATGATCAGTTAAACCTTTCTCTTAATGGCTTCAACACGTTACAGGATAATTTAGGAATAAAAACTGGCGACGTCGAT CCAAATACAGGGATGCCTATTTATCGTGGTGTTGATGGTACAGAAACCAAAGGGTTCGAGTTTGAAACCAATGGTGCCAT CACAGATGACTGGAACTTAACGCTTGGCTATACCTATTTCAAAATAGAAGATCCACAAGGAAATAGATTAAAAACAGACA TCCCTAACAAACAACTCAAACTCTTCACCACTTATGAATTAGGTGACGTTTTAGAGGGCCTCCAAATTGGCGGAGGGGCT CGTTGGTACAGCAGTATTTATAAAGAAGTAAGCGGTATACCTAATGTTGGAGATACCAAAGTAAAACAAGACAGTTACGC GATATACGATGTAATGGTGCGATATGAGGTAAACAAAAAACTTAACGTCAATGCAAATGTTAAAAACCTTTTTGATAAAG AATATTACAGCCAGATGGGGATCTATAACCAATATCACGCTGGCGAGCCTCGTAATATAAGCGTGAATGTTGACTACCAA TTTTAA
Upstream 100 bases:
>100_bases GAGAAAAGAACTTACGTTTTGCTGAGGATATTGCAAACCCTCTCGCTCTATTTGCTAAGACTCATCGCATTATTTAGTTC ACTGACTTTTAGGCCAAACA
Downstream 100 bases:
>100_bases GACCAACGCTGTTCATTCATTTATCTCAAATTTACTTGGAGGCCCCTACCGTAAGGTAGGGCGACATTTTATAACTATAT TAAAATGGCCAAAAGCAATC
Product: TonB-dependent iron-siderophore receptor precursor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 721; Mature: 720
Protein sequence:
>721_residues MTLNTNMTSPKIPTYSLFYGLSCVLTLPVMAEDNDNEAMEVMTITAHKQEIASYKTGETSTSTGMDLSYLETPQSVTAVN EQAMKDQQLNSVVDVMNSVSSVYARPMDNDRYTVSARGMEVSTILYDGVPITYDTRFNYGDNLMDTAIYDRVEVVRGANG LMIGAGEPSASINLIRKRPTHDFNANVSVGTGSWNLKRGVVDISGSVNTDESIRARLVAVHQERDSYLDRYEQKRSTLYG VIEADLTTDTLLTVGTDYQYNEPKGTMAGGLPLFHSDGTRTNYSTSATTAPDWASAETTALNSFVSLEHSFNPDWVIKGT YTYGDNSLDFNYLWPKGFPDPNTNEGMVPGSINYIDGNRKINNLNLTLKGHFSLFGQDHQMIAGFNNQKMTFENTYYKGL NAQSEVGDFTDPNWSYPEPEWSREKSWESTGETKQQGIYVASHINVTDQWSFVLGGRLSDWETDMNDFGTLHKNKISNEF TSYVGTTYAITPIVAVYASYSDIFTPQNVKGKNNTYLDPIKGKNYETGIKASLLDDQLNLSLNGFNTLQDNLGIKTGDVD PNTGMPIYRGVDGTETKGFEFETNGAITDDWNLTLGYTYFKIEDPQGNRLKTDIPNKQLKLFTTYELGDVLEGLQIGGGA RWYSSIYKEVSGIPNVGDTKVKQDSYAIYDVMVRYEVNKKLNVNANVKNLFDKEYYSQMGIYNQYHAGEPRNISVNVDYQ F
Sequences:
>Translated_721_residues MTLNTNMTSPKIPTYSLFYGLSCVLTLPVMAEDNDNEAMEVMTITAHKQEIASYKTGETSTSTGMDLSYLETPQSVTAVN EQAMKDQQLNSVVDVMNSVSSVYARPMDNDRYTVSARGMEVSTILYDGVPITYDTRFNYGDNLMDTAIYDRVEVVRGANG LMIGAGEPSASINLIRKRPTHDFNANVSVGTGSWNLKRGVVDISGSVNTDESIRARLVAVHQERDSYLDRYEQKRSTLYG VIEADLTTDTLLTVGTDYQYNEPKGTMAGGLPLFHSDGTRTNYSTSATTAPDWASAETTALNSFVSLEHSFNPDWVIKGT YTYGDNSLDFNYLWPKGFPDPNTNEGMVPGSINYIDGNRKINNLNLTLKGHFSLFGQDHQMIAGFNNQKMTFENTYYKGL NAQSEVGDFTDPNWSYPEPEWSREKSWESTGETKQQGIYVASHINVTDQWSFVLGGRLSDWETDMNDFGTLHKNKISNEF TSYVGTTYAITPIVAVYASYSDIFTPQNVKGKNNTYLDPIKGKNYETGIKASLLDDQLNLSLNGFNTLQDNLGIKTGDVD PNTGMPIYRGVDGTETKGFEFETNGAITDDWNLTLGYTYFKIEDPQGNRLKTDIPNKQLKLFTTYELGDVLEGLQIGGGA RWYSSIYKEVSGIPNVGDTKVKQDSYAIYDVMVRYEVNKKLNVNANVKNLFDKEYYSQMGIYNQYHAGEPRNISVNVDYQ F >Mature_720_residues TLNTNMTSPKIPTYSLFYGLSCVLTLPVMAEDNDNEAMEVMTITAHKQEIASYKTGETSTSTGMDLSYLETPQSVTAVNE QAMKDQQLNSVVDVMNSVSSVYARPMDNDRYTVSARGMEVSTILYDGVPITYDTRFNYGDNLMDTAIYDRVEVVRGANGL MIGAGEPSASINLIRKRPTHDFNANVSVGTGSWNLKRGVVDISGSVNTDESIRARLVAVHQERDSYLDRYEQKRSTLYGV IEADLTTDTLLTVGTDYQYNEPKGTMAGGLPLFHSDGTRTNYSTSATTAPDWASAETTALNSFVSLEHSFNPDWVIKGTY TYGDNSLDFNYLWPKGFPDPNTNEGMVPGSINYIDGNRKINNLNLTLKGHFSLFGQDHQMIAGFNNQKMTFENTYYKGLN AQSEVGDFTDPNWSYPEPEWSREKSWESTGETKQQGIYVASHINVTDQWSFVLGGRLSDWETDMNDFGTLHKNKISNEFT SYVGTTYAITPIVAVYASYSDIFTPQNVKGKNNTYLDPIKGKNYETGIKASLLDDQLNLSLNGFNTLQDNLGIKTGDVDP NTGMPIYRGVDGTETKGFEFETNGAITDDWNLTLGYTYFKIEDPQGNRLKTDIPNKQLKLFTTYELGDVLEGLQIGGGAR WYSSIYKEVSGIPNVGDTKVKQDSYAIYDVMVRYEVNKKLNVNANVKNLFDKEYYSQMGIYNQYHAGEPRNISVNVDYQF
Specific function: Receptor for the siderophore ferripyoverdine [H]
COG id: COG4773
COG function: function code P; Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787344, Length=726, Percent_Identity=34.435261707989, Blast_Score=416, Evalue=1e-117, Organism=Escherichia coli, GI1786344, Length=754, Percent_Identity=23.7400530503979, Blast_Score=120, Evalue=3e-28, Organism=Escherichia coli, GI1787024, Length=788, Percent_Identity=23.4771573604061, Blast_Score=114, Evalue=3e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR011662 - InterPro: IPR000531 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 80618; Mature: 80487
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLNTNMTSPKIPTYSLFYGLSCVLTLPVMAEDNDNEAMEVMTITAHKQEIASYKTGETS CEECCCCCCCCCCCHHHHHHCEEEEEEEEEECCCCCCEEEEEEEEHHHHHHHHCCCCCCC TSTGMDLSYLETPQSVTAVNEQAMKDQQLNSVVDVMNSVSSVYARPMDNDRYTVSARGME CCCCCEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEE VSTILYDGVPITYDTRFNYGDNLMDTAIYDRVEVVRGANGLMIGAGEPSASINLIRKRPT EEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCC HDFNANVSVGTGSWNLKRGVVDISGSVNTDESIRARLVAVHQERDSYLDRYEQKRSTLYG CCCCCEEEEECCCCEEECCEEEECCCCCCCHHHHEEEEEEHHHHHHHHHHHHHHHHHEEE VIEADLTTDTLLTVGTDYQYNEPKGTMAGGLPLFHSDGTRTNYSTSATTAPDWASAETTA EEEECCCCCEEEEECCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHH LNSFVSLEHSFNPDWVIKGTYTYGDNSLDFNYLWPKGFPDPNTNEGMVPGSINYIDGNRK HHHHEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCE INNLNLTLKGHFSLFGQDHQMIAGFNNQKMTFENTYYKGLNAQSEVGDFTDPNWSYPEPE EEEEEEEEEEEEEEECCCCEEEECCCCCEEEECCCEECCCCCHHHCCCCCCCCCCCCCCC WSREKSWESTGETKQQGIYVASHINVTDQWSFVLGGRLSDWETDMNDFGTLHKNKISNEF CCCCCCCCCCCCHHHCCEEEEEECCCCCCEEEEECCCCCCCCCCHHHHCCHHHHHHHHHH TSYVGTTYAITPIVAVYASYSDIFTPQNVKGKNNTYLDPIKGKNYETGIKASLLDDQLNL HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCEEE SLNGFNTLQDNLGIKTGDVDPNTGMPIYRGVDGTETKGFEFETNGAITDDWNLTLGYTYF EECCCCHHHHCCCEEECCCCCCCCCCEEECCCCCCCCCEEEECCCCEECCCCEEEEEEEE KIEDPQGNRLKTDIPNKQLKLFTTYELGDVLEGLQIGGGARWYSSIYKEVSGIPNVGDTK EEECCCCCEEECCCCCCEEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC VKQDSYAIYDVMVRYEVNKKLNVNANVKNLFDKEYYSQMGIYNQYHAGEPRNISVNVDYQ CCCCCEEEEEEEEEEEECCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEE F C >Mature Secondary Structure TLNTNMTSPKIPTYSLFYGLSCVLTLPVMAEDNDNEAMEVMTITAHKQEIASYKTGETS EECCCCCCCCCCCHHHHHHCEEEEEEEEEECCCCCCEEEEEEEEHHHHHHHHCCCCCCC TSTGMDLSYLETPQSVTAVNEQAMKDQQLNSVVDVMNSVSSVYARPMDNDRYTVSARGME CCCCCEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEE VSTILYDGVPITYDTRFNYGDNLMDTAIYDRVEVVRGANGLMIGAGEPSASINLIRKRPT EEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCC HDFNANVSVGTGSWNLKRGVVDISGSVNTDESIRARLVAVHQERDSYLDRYEQKRSTLYG CCCCCEEEEECCCCEEECCEEEECCCCCCCHHHHEEEEEEHHHHHHHHHHHHHHHHHEEE VIEADLTTDTLLTVGTDYQYNEPKGTMAGGLPLFHSDGTRTNYSTSATTAPDWASAETTA EEEECCCCCEEEEECCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHH LNSFVSLEHSFNPDWVIKGTYTYGDNSLDFNYLWPKGFPDPNTNEGMVPGSINYIDGNRK HHHHEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCE INNLNLTLKGHFSLFGQDHQMIAGFNNQKMTFENTYYKGLNAQSEVGDFTDPNWSYPEPE EEEEEEEEEEEEEEECCCCEEEECCCCCEEEECCCEECCCCCHHHCCCCCCCCCCCCCCC WSREKSWESTGETKQQGIYVASHINVTDQWSFVLGGRLSDWETDMNDFGTLHKNKISNEF CCCCCCCCCCCCHHHCCEEEEEECCCCCCEEEEECCCCCCCCCCHHHHCCHHHHHHHHHH TSYVGTTYAITPIVAVYASYSDIFTPQNVKGKNNTYLDPIKGKNYETGIKASLLDDQLNL HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCEEE SLNGFNTLQDNLGIKTGDVDPNTGMPIYRGVDGTETKGFEFETNGAITDDWNLTLGYTYF EECCCCHHHHCCCEEECCCCCCCCCCEEECCCCCCCCCEEEECCCCEECCCCEEEEEEEE KIEDPQGNRLKTDIPNKQLKLFTTYELGDVLEGLQIGGGARWYSSIYKEVSGIPNVGDTK EEECCCCCEEECCCCCCEEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC VKQDSYAIYDVMVRYEVNKKLNVNANVKNLFDKEYYSQMGIYNQYHAGEPRNISVNVDYQ CCCCCEEEEEEEEEEEECCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEE F C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8335619; 8918232; 10984043 [H]