| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is fecB [C]
Identifier: 209693760
GI number: 209693760
Start: 177570
End: 178520
Strand: Direct
Name: fecB [C]
Synonym: VSAL_I0138
Alternate gene names: 209693760
Gene position: 177570-178520 (Clockwise)
Preceding gene: 209693759
Following gene: 209693761
Centisome position: 5.34
GC content: 43.32
Gene sequence:
>951_bases ATGAGTAGCCACACTGCTGCTATTCCCTTAAACCAAATAAGCAGCTCCCCATTCCCTGTCACCATTAAAACCGCGCATGG AACCGCGGTTATTCCTACTCACCCGCAACGCGTCATCACTCTAGGCGCAACAACCGAAGATTGGTGCTTGCTCTTAGGCA TTGTGCCTATCGCCATTGAAGCTCATTATTGGGGTGGTGACAGCAAAGGTTATCTACCTTGGTTTAAACAAGCCGTCCTA GAACAAGAAAAAGCCTTACCCTCAGTACTCAATAGCTACCCTGAACTCGATATCGAGCATATTTTATCATTAAAACCCGA CCTAATTTTAGCGCCACAATCTGGGATCACACTCGAAACGTTTAACCAATTAAACAGTTTTGTTCCTGTTGTTGCTTATC CAGATCAACCTTGGCTTACCCCTATCGATAAGCAAGTTACCCTCATTTCAACGGCTTTAGGAAAAACAGAAGAAGGAGAG GCCCTGCTTGTTCAATTACACCAATACCTTGCTTCACTTGCCGATGCAAACCCTCAATTTAAAGGTAAAAAACTGGCGTA TATTAATGCAGGAAGTCGATTCGGTAATCTTGCGTTGTATGTACCTGGCGATCCACGTATCGATTCTCTACTCGCACTCG GCTTTATACAACTTCCTGAAGTCAAAGACATAAAACCAACTCGTGGACATTTCACGGCCAACATTGGTTTAGAGCACTCC GATATATTTAATGATGCCGATCTCATTATTAGTTGGTATGAGTCTGAAAAAAGCAAACAAGCCGTTGAAAAAATCCCGCT TTTCTCACACATCAACGCCGTTAAGCAAGGACGATATCTTGCGATAACCGATCCCTCAATTGTAATGGCGACGTCCTATG GCAGTTTACTCAGTTTGGAATGGGTAATGCCCGCATTTATTCCAAAAATCAAAGAGGTTATGGGTAAATGA
Upstream 100 bases:
>100_bases ATTTATCTCAAATTTACTTGGAGGCCCCTACCGTAAGGTAGGGCGACATTTTATAACTATATTAAAATGGCCAAAAGCAA TCTCTCTGCTGTTTATATTC
Downstream 100 bases:
>100_bases ATAACGCAGATAACCAATTAACTAGTACACCTGACTTGGCTATTCTCCCTTCTTTAATCAGCAGAAATAAAAAGGTCACT ACCACATTAATATTGCTAAT
Product: iron-siderophore ABC transporter periplasmic binding protein
Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]
Alternate protein names: Twin-Arginine Translocation Pathway Signal; Transport System Permease Protein; ABC-Type Fe3+-Siderophores Transport System; ABC-Transport System; ABC-Type Fe3+-Hydroxamate Transport System; Periplasmic Iron-Transport Lipoprotein; Periplasmic IRON-Transport Lipoprotein; Iron ABC Transporter Permease; Lipoprotein
Number of amino acids: Translated: 316; Mature: 315
Protein sequence:
>316_residues MSSHTAAIPLNQISSSPFPVTIKTAHGTAVIPTHPQRVITLGATTEDWCLLLGIVPIAIEAHYWGGDSKGYLPWFKQAVL EQEKALPSVLNSYPELDIEHILSLKPDLILAPQSGITLETFNQLNSFVPVVAYPDQPWLTPIDKQVTLISTALGKTEEGE ALLVQLHQYLASLADANPQFKGKKLAYINAGSRFGNLALYVPGDPRIDSLLALGFIQLPEVKDIKPTRGHFTANIGLEHS DIFNDADLIISWYESEKSKQAVEKIPLFSHINAVKQGRYLAITDPSIVMATSYGSLLSLEWVMPAFIPKIKEVMGK
Sequences:
>Translated_316_residues MSSHTAAIPLNQISSSPFPVTIKTAHGTAVIPTHPQRVITLGATTEDWCLLLGIVPIAIEAHYWGGDSKGYLPWFKQAVL EQEKALPSVLNSYPELDIEHILSLKPDLILAPQSGITLETFNQLNSFVPVVAYPDQPWLTPIDKQVTLISTALGKTEEGE ALLVQLHQYLASLADANPQFKGKKLAYINAGSRFGNLALYVPGDPRIDSLLALGFIQLPEVKDIKPTRGHFTANIGLEHS DIFNDADLIISWYESEKSKQAVEKIPLFSHINAVKQGRYLAITDPSIVMATSYGSLLSLEWVMPAFIPKIKEVMGK >Mature_315_residues SSHTAAIPLNQISSSPFPVTIKTAHGTAVIPTHPQRVITLGATTEDWCLLLGIVPIAIEAHYWGGDSKGYLPWFKQAVLE QEKALPSVLNSYPELDIEHILSLKPDLILAPQSGITLETFNQLNSFVPVVAYPDQPWLTPIDKQVTLISTALGKTEEGEA LLVQLHQYLASLADANPQFKGKKLAYINAGSRFGNLALYVPGDPRIDSLLALGFIQLPEVKDIKPTRGHFTANIGLEHSD IFNDADLIISWYESEKSKQAVEKIPLFSHINAVKQGRYLAITDPSIVMATSYGSLLSLEWVMPAFIPKIKEVMGK
Specific function: Binds Citrate-Dependent Iron(III); Part Of The Binding- Protein-Dependent Transport System For Uptake Of Citrate-Dependent Iron(III). [C]
COG id: COG0614
COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34702; Mature: 34571
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: PS50042 CNMP_BINDING_3 ; PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSHTAAIPLNQISSSPFPVTIKTAHGTAVIPTHPQRVITLGATTEDWCLLLGIVPIAIE CCCCCEEEEHHHHCCCCCCEEEEECCCCEEECCCCCEEEEECCCCHHHHHHHHHHHHEEE AHYWGGDSKGYLPWFKQAVLEQEKALPSVLNSYPELDIEHILSLKPDLILAPQSGITLET EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEECCCCCCCHHH FNQLNSFVPVVAYPDQPWLTPIDKQVTLISTALGKTEEGEALLVQLHQYLASLADANPQF HHHHHCCCCEEEECCCCCCCCCCCCEEEEHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCC KGKKLAYINAGSRFGNLALYVPGDPRIDSLLALGFIQLPEVKDIKPTRGHFTANIGLEHS CCCEEEEEECCCCCCCEEEEECCCCCHHHHHHHHCEECCCCCCCCCCCCCEEEECCCCHH DIFNDADLIISWYESEKSKQAVEKIPLFSHINAVKQGRYLAITDPSIVMATSYGSLLSLE HCCCCHHEEEEEHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCEEEEECCCCCEEHH WVMPAFIPKIKEVMGK HHHHHHHHHHHHHHCC >Mature Secondary Structure SSHTAAIPLNQISSSPFPVTIKTAHGTAVIPTHPQRVITLGATTEDWCLLLGIVPIAIE CCCCEEEEHHHHCCCCCCEEEEECCCCEEECCCCCEEEEECCCCHHHHHHHHHHHHEEE AHYWGGDSKGYLPWFKQAVLEQEKALPSVLNSYPELDIEHILSLKPDLILAPQSGITLET EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEECCCCCCCHHH FNQLNSFVPVVAYPDQPWLTPIDKQVTLISTALGKTEEGEALLVQLHQYLASLADANPQF HHHHHCCCCEEEECCCCCCCCCCCCEEEEHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCC KGKKLAYINAGSRFGNLALYVPGDPRIDSLLALGFIQLPEVKDIKPTRGHFTANIGLEHS CCCEEEEEECCCCCCCEEEEECCCCCHHHHHHHHCEECCCCCCCCCCCCCEEEECCCCHH DIFNDADLIISWYESEKSKQAVEKIPLFSHINAVKQGRYLAITDPSIVMATSYGSLLSLE HCCCCHHEEEEEHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCEEEEECCCCCEEHH WVMPAFIPKIKEVMGK HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]
Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA