| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209693724
Identifier: 209693724
GI number: 209693724
Start: 136794
End: 137672
Strand: Direct
Name: 209693724
Synonym: VSAL_I0101
Alternate gene names: NA
Gene position: 136794-137672 (Clockwise)
Preceding gene: 209693721
Following gene: 209693725
Centisome position: 4.11
GC content: 41.18
Gene sequence:
>879_bases ATGACTAAATTAATAAACAAAACAGCACTCTCATTTATTGTGCTAAGTAATGTCGTCGTAGTGACAAGCGCGTATGCGAA TATAAATTTAACCGATTATTTAACGACAAAAAAAAGTGCCTTAATGTCGGTGTGTGTGCCTAAAGCGTCTACGGCAATGA ACGAATTGTCGGAATCTTGCCCGATTGGTGAAGGGTTATGGGGAAACCAGTCAGCAAAGCATGACGAGGGTGACAGTGAA TTTTGGATTCAATGCGGTCTTTTTCGTAAGACAATCGATGATGCGGTTATTTCTCGACTTAGTGAGGCGGTGAATGCGCC CATTAATATGAAAAAAGAAGGCGATTTAAATCGCTGTTTGATTGGACCTTACCTAGATTACACCATCGCCAGTAAATCAT TAGCAGCTTTACAGCGTGATCGTTTATTTAAGCTTGCTACGTTGAGAGAAGTGGATCTTTCTACCATACCAAAACCGGAG ATCATCCCTGAAGTGGTTGCAGAGCCGGAACCTGCTCCGATCACGATTCGCAAAGCTGTGATGATCAATCAAACGCATTT TGTTGTGCCATTCAGTCATGACACCACGGAAGGTTTTTACATGGAAGGTAAAATGCCATGGCTACGAGCAACGGAACAGC ACGCCCAAGAGATCTGCCAACGGATAGATATGAATTTAGTTACTAAAGAGCAATGGAAAATATTGGCTGATTCTACGATA ATGAAAAAAGATAAATGGCCAATGCAATTGCCTTACTGGGGAGCTAATGATTTAGGCCTCTTTAAAGACGGTTCGACCAA AAAATTAAAGAACACGTCCATGTTGAATGTGGTGTGTACTAAAAAGACAGAAGGTGACGTTGTTGGAAATCCAATTTAA
Upstream 100 bases:
>100_bases TTAAATTACGCGATATGAAAGCATTGGAAATAGGATCTCGGATCTGAAACACAACTTTTGCTATGCTGATAATATTGTTA ACGCTGCTTGGGGAAGTCAG
Downstream 100 bases:
>100_bases AGGTCGTTGGGACAGTAAGTCTCTGGCGGAAAATCTACAAGAAGCATTAGAAACACTGGAAGAAGAGTTTGGCGTAAAAG CGTTATCAGATATTACGTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MTKLINKTALSFIVLSNVVVVTSAYANINLTDYLTTKKSALMSVCVPKASTAMNELSESCPIGEGLWGNQSAKHDEGDSE FWIQCGLFRKTIDDAVISRLSEAVNAPINMKKEGDLNRCLIGPYLDYTIASKSLAALQRDRLFKLATLREVDLSTIPKPE IIPEVVAEPEPAPITIRKAVMINQTHFVVPFSHDTTEGFYMEGKMPWLRATEQHAQEICQRIDMNLVTKEQWKILADSTI MKKDKWPMQLPYWGANDLGLFKDGSTKKLKNTSMLNVVCTKKTEGDVVGNPI
Sequences:
>Translated_292_residues MTKLINKTALSFIVLSNVVVVTSAYANINLTDYLTTKKSALMSVCVPKASTAMNELSESCPIGEGLWGNQSAKHDEGDSE FWIQCGLFRKTIDDAVISRLSEAVNAPINMKKEGDLNRCLIGPYLDYTIASKSLAALQRDRLFKLATLREVDLSTIPKPE IIPEVVAEPEPAPITIRKAVMINQTHFVVPFSHDTTEGFYMEGKMPWLRATEQHAQEICQRIDMNLVTKEQWKILADSTI MKKDKWPMQLPYWGANDLGLFKDGSTKKLKNTSMLNVVCTKKTEGDVVGNPI >Mature_291_residues TKLINKTALSFIVLSNVVVVTSAYANINLTDYLTTKKSALMSVCVPKASTAMNELSESCPIGEGLWGNQSAKHDEGDSEF WIQCGLFRKTIDDAVISRLSEAVNAPINMKKEGDLNRCLIGPYLDYTIASKSLAALQRDRLFKLATLREVDLSTIPKPEI IPEVVAEPEPAPITIRKAVMINQTHFVVPFSHDTTEGFYMEGKMPWLRATEQHAQEICQRIDMNLVTKEQWKILADSTIM KKDKWPMQLPYWGANDLGLFKDGSTKKLKNTSMLNVVCTKKTEGDVVGNPI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32584; Mature: 32453
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKLINKTALSFIVLSNVVVVTSAYANINLTDYLTTKKSALMSVCVPKASTAMNELSESC CCCHHHHHHHHHHHHHCCCEEEECCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC PIGEGLWGNQSAKHDEGDSEFWIQCGLFRKTIDDAVISRLSEAVNAPINMKKEGDLNRCL CCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE IGPYLDYTIASKSLAALQRDRLFKLATLREVDLSTIPKPEIIPEVVAEPEPAPITIRKAV ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEEEEEE MINQTHFVVPFSHDTTEGFYMEGKMPWLRATEQHAQEICQRIDMNLVTKEQWKILADSTI EECCEEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHH MKKDKWPMQLPYWGANDLGLFKDGSTKKLKNTSMLNVVCTKKTEGDVVGNPI HCCCCCCCCCCCCCCCCCCEECCCCCCHHCCCCEEEEEEECCCCCCCCCCCC >Mature Secondary Structure TKLINKTALSFIVLSNVVVVTSAYANINLTDYLTTKKSALMSVCVPKASTAMNELSESC CCHHHHHHHHHHHHHCCCEEEECCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC PIGEGLWGNQSAKHDEGDSEFWIQCGLFRKTIDDAVISRLSEAVNAPINMKKEGDLNRCL CCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE IGPYLDYTIASKSLAALQRDRLFKLATLREVDLSTIPKPEIIPEVVAEPEPAPITIRKAV ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEEEEEE MINQTHFVVPFSHDTTEGFYMEGKMPWLRATEQHAQEICQRIDMNLVTKEQWKILADSTI EECCEEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHH MKKDKWPMQLPYWGANDLGLFKDGSTKKLKNTSMLNVVCTKKTEGDVVGNPI HCCCCCCCCCCCCCCCCCCEECCCCCCHHCCCCEEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA