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The map label for this gene is rimN [H]

Identifier: 209693706

GI number: 209693706

Start: 84360

End: 84917

Strand: Direct

Name: rimN [H]

Synonym: VSAL_I0082

Alternate gene names: 209693706

Gene position: 84360-84917 (Clockwise)

Preceding gene: 209693703

Following gene: 209693707

Centisome position: 2.54

GC content: 41.4

Gene sequence:

>558_bases
GTGAAGAATCTAGATCAAGTCGTAAAAGCCTTAAATAACGGTGGTGTAATTGCCTATCCTACGGAGGGGGTTTTTGGTGT
TGGCTGTGATCCGGATAATGAATTTGCACTCCATCAATTATTAAAAGTGAAACAACGCCCGCGAGAAAAAGGGTTGATTT
TAATTGCGGCCTCTATTGATCAATTGCTTCCTTATATTGATTTAGCGCAATTAAATAATGATCAAATTAATAGGATTAAA
TTCACTTGGCCGGGTCCCGTAACTTGGATTGTCCCTGTTAATAAGAACACGTTACCTTTAGTGACTGGCCAGTTTGATAG
TATTGCCGTTAGAGTCTCAGCTCACCCTCAAGTTAAAGCTATTTGTTCTGCGTTTGGGAAGCCGATTACGTCAACTAGTG
CAAATCTTTCAGGTTATGAACCTTGCCGAACGGTTTTAGAAGTTGAAGAGCAGCTAGGTGATTTAGGCGTGGTGGTTTTT
CAAGGCGAAATTGGCAACCGAACTCAACCAACAGAAATCCGTGATGCAAAAACTGGAGAGACATTACGCCAAGGCTAA

Upstream 100 bases:

>100_bases
GTTATTAACGATTATTCACAATTGAAAAATGGAAAGCGGTTGTTTGATTTCGTCTTATGAATAGAATAGAGCGATTAATA
GAGTTAATAATGGTGCAAGA

Downstream 100 bases:

>100_bases
TGCATCTACTATTTCTTTCAGGTAAGGTTAGTTCAGTTTAACTTTAATCATTGAAAGGAATCACTCATGGATAAGTATGC
AGTCTTTGGTCATCCCATTA

Product: hypothetical protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MKNLDQVVKALNNGGVIAYPTEGVFGVGCDPDNEFALHQLLKVKQRPREKGLILIAASIDQLLPYIDLAQLNNDQINRIK
FTWPGPVTWIVPVNKNTLPLVTGQFDSIAVRVSAHPQVKAICSAFGKPITSTSANLSGYEPCRTVLEVEEQLGDLGVVVF
QGEIGNRTQPTEIRDAKTGETLRQG

Sequences:

>Translated_185_residues
MKNLDQVVKALNNGGVIAYPTEGVFGVGCDPDNEFALHQLLKVKQRPREKGLILIAASIDQLLPYIDLAQLNNDQINRIK
FTWPGPVTWIVPVNKNTLPLVTGQFDSIAVRVSAHPQVKAICSAFGKPITSTSANLSGYEPCRTVLEVEEQLGDLGVVVF
QGEIGNRTQPTEIRDAKTGETLRQG
>Mature_185_residues
MKNLDQVVKALNNGGVIAYPTEGVFGVGCDPDNEFALHQLLKVKQRPREKGLILIAASIDQLLPYIDLAQLNNDQINRIK
FTWPGPVTWIVPVNKNTLPLVTGQFDSIAVRVSAHPQVKAICSAFGKPITSTSANLSGYEPCRTVLEVEEQLGDLGVVVF
QGEIGNRTQPTEIRDAKTGETLRQG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=178, Percent_Identity=58.4269662921348, Blast_Score=200, Evalue=5e-53,
Organism=Escherichia coli, GI87081864, Length=138, Percent_Identity=28.2608695652174, Blast_Score=67, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6321269, Length=160, Percent_Identity=30.625, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI78707274, Length=159, Percent_Identity=29.559748427673, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 20175; Mature: 20175

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLDQVVKALNNGGVIAYPTEGVFGVGCDPDNEFALHQLLKVKQRPREKGLILIAASID
CCCHHHHHHHHCCCCEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECHH
QLLPYIDLAQLNNDQINRIKFTWPGPVTWIVPVNKNTLPLVTGQFDSIAVRVSAHPQVKA
HHCCHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEEECCCHHHH
ICSAFGKPITSTSANLSGYEPCRTVLEVEEQLGDLGVVVFQGEIGNRTQPTEIRDAKTGE
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCH
TLRQG
HHHCC
>Mature Secondary Structure
MKNLDQVVKALNNGGVIAYPTEGVFGVGCDPDNEFALHQLLKVKQRPREKGLILIAASID
CCCHHHHHHHHCCCCEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECHH
QLLPYIDLAQLNNDQINRIKFTWPGPVTWIVPVNKNTLPLVTGQFDSIAVRVSAHPQVKA
HHCCHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEEECCCHHHH
ICSAFGKPITSTSANLSGYEPCRTVLEVEEQLGDLGVVVFQGEIGNRTQPTEIRDAKTGE
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCH
TLRQG
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA