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The map label for this gene is yrdD [H]

Identifier: 209693703

GI number: 209693703

Start: 81946

End: 82515

Strand: Direct

Name: yrdD [H]

Synonym: VSAL_I0079

Alternate gene names: 209693703

Gene position: 81946-82515 (Clockwise)

Preceding gene: 209693702

Following gene: 209693706

Centisome position: 2.46

GC content: 38.6

Gene sequence:

>570_bases
ATGTCAGGTAAAATAAACAAGCAACTGTTTCAAGCGCATGAACATGCATTAGATCATGAATCTTGCCCACAATGCAGTGG
TGAACTTGCCATTCGTTATGGTAAGCGTGGTCCGTTTTTAGGTTGTGGTAATTACCCTGAGTGCGATTATATTCGCCCTC
TTAAAAGTAATGACGGTCATGTAGTTAAAGAGCTTGGTATTCCCTGCCCTGAATGTGACAGTGAACTTGTTTTACGACAA
GGCCGATATGGAATGTTTATAGGGTGTTCTTCATACCCAGAGTGTTCTCATATTGAATCGTTAGAACAGAAAAAAGAAGA
ACCTAAAGAGCTATTGGCTTGCCCTAGTTGTCATTCTGGATCTTTACATGAGAAACAGTCTCGTTTTGGTAAGACTTTCT
ATGCTTGTGATGCTTATCCTGTTTGTCGTTTTGTTGTTAATTTTGCGCCAGAAAAAGGCATATGTCAGCAGTGTGGTTTT
GAGTTGTTGCTAAGAAAAGAAATAGCAACAGGTTTAAAATTGGTTTGTGCAGATAAAAAGTGCAGTGTGGTACAAGATAT
AAAAAAATAG

Upstream 100 bases:

>100_bases
AATGGTGCTATTTAATGTACCAGGACAAGAAAGTGCGTATACCCAGATGGAAGAGTTACTTTATACTTCAGATACAGGTA
TGACTCATTAAGGTTAATGA

Downstream 100 bases:

>100_bases
AGCATTGATGAATGCTCTATTCTATTGAGGTGTATCTGTTTATTTTGATAATACTTGAAATGCATTTTTATCTAATAATT
CAGAGAGTGCCATTAATTCT

Product: DNA topoisomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSGKINKQLFQAHEHALDHESCPQCSGELAIRYGKRGPFLGCGNYPECDYIRPLKSNDGHVVKELGIPCPECDSELVLRQ
GRYGMFIGCSSYPECSHIESLEQKKEEPKELLACPSCHSGSLHEKQSRFGKTFYACDAYPVCRFVVNFAPEKGICQQCGF
ELLLRKEIATGLKLVCADKKCSVVQDIKK

Sequences:

>Translated_189_residues
MSGKINKQLFQAHEHALDHESCPQCSGELAIRYGKRGPFLGCGNYPECDYIRPLKSNDGHVVKELGIPCPECDSELVLRQ
GRYGMFIGCSSYPECSHIESLEQKKEEPKELLACPSCHSGSLHEKQSRFGKTFYACDAYPVCRFVVNFAPEKGICQQCGF
ELLLRKEIATGLKLVCADKKCSVVQDIKK
>Mature_188_residues
SGKINKQLFQAHEHALDHESCPQCSGELAIRYGKRGPFLGCGNYPECDYIRPLKSNDGHVVKELGIPCPECDSELVLRQG
RYGMFIGCSSYPECSHIESLEQKKEEPKELLACPSCHSGSLHEKQSRFGKTFYACDAYPVCRFVVNFAPEKGICQQCGFE
LLLRKEIATGLKLVCADKKCSVVQDIKK

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1 [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=166, Percent_Identity=54.2168674698795, Blast_Score=187, Evalue=4e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: 5.99.1.2

Molecular weight: Translated: 21126; Mature: 20994

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
9.5 %Cys+Met (Translated Protein)
8.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
9.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKINKQLFQAHEHALDHESCPQCSGELAIRYGKRGPFLGCGNYPECDYIRPLKSNDGH
CCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCE
VVKELGIPCPECDSELVLRQGRYGMFIGCSSYPECSHIESLEQKKEEPKELLACPSCHSG
EHHHHCCCCCCCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCHHHHHCCCCCCCC
SLHEKQSRFGKTFYACDAYPVCRFVVNFAPEKGICQQCGFELLLRKEIATGLKLVCADKK
CCHHHHHHHCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCC
CSVVQDIKK
HHHHHHHCC
>Mature Secondary Structure 
SGKINKQLFQAHEHALDHESCPQCSGELAIRYGKRGPFLGCGNYPECDYIRPLKSNDGH
CCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCE
VVKELGIPCPECDSELVLRQGRYGMFIGCSSYPECSHIESLEQKKEEPKELLACPSCHSG
EHHHHCCCCCCCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCHHHHHCCCCCCCC
SLHEKQSRFGKTFYACDAYPVCRFVVNFAPEKGICQQCGFELLLRKEIATGLKLVCADKK
CCHHHHHHHCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCC
CSVVQDIKK
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]