Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209693689

Identifier: 209693689

GI number: 209693689

Start: 64200

End: 64604

Strand: Direct

Name: 209693689

Synonym: VSAL_I0060

Alternate gene names: NA

Gene position: 64200-64604 (Clockwise)

Preceding gene: 209693688

Following gene: 209693690

Centisome position: 1.93

GC content: 41.98

Gene sequence:

>405_bases
ATGTCCACTAATAAAAAGAAGTTGTCTCGAGTGGTGAATACTAATCGAGCCAGCCTAATTAAGTTGTACTCATTGCATTT
TGAAGACAGTGCCACTCAAGCCATTGAACAAATAACCATTAGAGCGATTAATCGGACCTATGTTGCTTATAGGCCCCCAC
CCCCTGGTGAAGTAATGAAAGCTTGGGTTATTGAAAATCGCGCGCCCCAATGGGCTTGTAGGGCTACCTTTGACCTGTTG
ATTGAGCTTGATTGGTTGCCAAATACTGATATTGAAAAAGCTATTGCGGCTCGCTTTCTTTTTTTGAATGACTACCCAAT
CACTGAAAGTTGGAAAGCGTTATTAGGCGAGTGGTTAGAACTTGCCAAGCAAGCACAAAATGAGAACTCGGATGAATACG
AATAA

Upstream 100 bases:

>100_bases
GCCGAAAGTGGCAAAATAGTGATTGTGCTTGACGCTAGTTCAGGCAAATTGACCGTTCCTGCCTGCGAAGTTTCAGTGAT
TGGGTATCACTCGTTAGAGC

Downstream 100 bases:

>100_bases
CTACAATGAAACTCTTAAAGATGAATACCGCACATCAGTTTTGGCGTTTTTTAATACCGTAGAAGAGCAACGCGAAGACC
GCGAACTTAGCGCACGGATG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MSTNKKKLSRVVNTNRASLIKLYSLHFEDSATQAIEQITIRAINRTYVAYRPPPPGEVMKAWVIENRAPQWACRATFDLL
IELDWLPNTDIEKAIAARFLFLNDYPITESWKALLGEWLELAKQAQNENSDEYE

Sequences:

>Translated_134_residues
MSTNKKKLSRVVNTNRASLIKLYSLHFEDSATQAIEQITIRAINRTYVAYRPPPPGEVMKAWVIENRAPQWACRATFDLL
IELDWLPNTDIEKAIAARFLFLNDYPITESWKALLGEWLELAKQAQNENSDEYE
>Mature_133_residues
STNKKKLSRVVNTNRASLIKLYSLHFEDSATQAIEQITIRAINRTYVAYRPPPPGEVMKAWVIENRAPQWACRATFDLLI
ELDWLPNTDIEKAIAARFLFLNDYPITESWKALLGEWLELAKQAQNENSDEYE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15529; Mature: 15398

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNKKKLSRVVNTNRASLIKLYSLHFEDSATQAIEQITIRAINRTYVAYRPPPPGEVMK
CCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHH
AWVIENRAPQWACRATFDLLIELDWLPNTDIEKAIAARFLFLNDYPITESWKALLGEWLE
HHHHCCCCCCHHHHHHEEHEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
LAKQAQNENSDEYE
HHHHHCCCCCCCCC
>Mature Secondary Structure 
STNKKKLSRVVNTNRASLIKLYSLHFEDSATQAIEQITIRAINRTYVAYRPPPPGEVMK
CCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHH
AWVIENRAPQWACRATFDLLIELDWLPNTDIEKAIAARFLFLNDYPITESWKALLGEWLE
HHHHCCCCCCHHHHHHEEHEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
LAKQAQNENSDEYE
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA