| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209693663
Identifier: 209693663
GI number: 209693663
Start: 32166
End: 32456
Strand: Direct
Name: 209693663
Synonym: VSAL_I0030
Alternate gene names: NA
Gene position: 32166-32456 (Clockwise)
Preceding gene: 209693661
Following gene: 209693664
Centisome position: 0.97
GC content: 30.93
Gene sequence:
>291_bases ATGCGTTTAACAATGGGTACGACTATAAATAGTAAAAATTTAAGCGAGCAAATATTTAATTTTTTACGAGAAAATAAAAA AGCATCGATTCGAGAGTTGATAGAACTCACTGGAGAATCGAGACAAAGAGTGCAATCAACGATTTCTGGTCTTCGAGTTA AATCAGAAAATAGTGATTATAAAATATTGTCACGTAATGAGAATATAGGAGAGGTTACTTATGAATATACACCTCAAGAA AAAAACCAATTCCAACGATGCGAACAATTACTAAAGTCTATTTTTTGTTGA
Upstream 100 bases:
>100_bases TAGCACTAACAAAAAGTAACGATGGCAATAATGTATTTTACAAAAAGAAGATATTGTTTTATACGAACACATCGATTTAT TTGATGACGGTTCATCAAGG
Downstream 100 bases:
>100_bases GTTCTTTATTGCTATCGCAAAGGTCGCCTAATTGGCAGCCTTTTTCGCGTCTGGACGCTACACGATCACGCGCGTTCTGA ACTGATTTAACTTAACTGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 96; Mature: 96
Protein sequence:
>96_residues MRLTMGTTINSKNLSEQIFNFLRENKKASIRELIELTGESRQRVQSTISGLRVKSENSDYKILSRNENIGEVTYEYTPQE KNQFQRCEQLLKSIFC
Sequences:
>Translated_96_residues MRLTMGTTINSKNLSEQIFNFLRENKKASIRELIELTGESRQRVQSTISGLRVKSENSDYKILSRNENIGEVTYEYTPQE KNQFQRCEQLLKSIFC >Mature_96_residues MRLTMGTTINSKNLSEQIFNFLRENKKASIRELIELTGESRQRVQSTISGLRVKSENSDYKILSRNENIGEVTYEYTPQE KNQFQRCEQLLKSIFC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11253; Mature: 11253
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLTMGTTINSKNLSEQIFNFLRENKKASIRELIELTGESRQRVQSTISGLRVKSENSDY CCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCE KILSRNENIGEVTYEYTPQEKNQFQRCEQLLKSIFC EEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MRLTMGTTINSKNLSEQIFNFLRENKKASIRELIELTGESRQRVQSTISGLRVKSENSDY CCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCE KILSRNENIGEVTYEYTPQEKNQFQRCEQLLKSIFC EEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA