Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209693661

Identifier: 209693661

GI number: 209693661

Start: 29602

End: 30555

Strand: Direct

Name: 209693661

Synonym: VSAL_I0028

Alternate gene names: NA

Gene position: 29602-30555 (Clockwise)

Preceding gene: 209693660

Following gene: 209693663

Centisome position: 0.89

GC content: 37.42

Gene sequence:

>954_bases
ATGCGTACTCGAATCTATATTGATGGTTACAATTTTTATTATGGTTGCTTGAAAGGTACTCCATATAAATGGCTAGACCT
AGTTAAACTCTTTGAAGAGCATATTATCCCTCGTTCTGATGTATACAATGCCACCTTACACGATAATGTAGGGATCAAAT
ATTTTACCGCGGAGATAACCAATAAAGCAGCAGCAGACCCTAATTCAGTTAATGACCAACGTTCTTATCATCACGCGCTT
TATCTCCATAGTGAAAATTTGCTAAAAACGATCAAAGGTAGCTACGCAGTTGATAAAGTCGAATACCCGAAAGTGGAGTA
TTATGAGGCAGGCATCGAAAAAGAGCCAAAAGATTGTGCAAGAGTTAAGGTGTGGAAATTAGAAGAAAAACAGAGCGATG
TGAATATAGCGATTGAAGCTGTCTATGACGCAGTTATGGATCATACGTTAGAACAAATTATCTTTGTTACCAATGATACT
GATATTGTCCCCGCTTTAGAAAAAATCCGTGAACACAATCAAAAATCGCTACGCTCACCAATAAAAATTGGTCTTGTTAT
CCCTTCCAAAGAGAATAATGAATATCGTAAACCTAATAAGTCACTGAGTAATTTGGCCGATTGGACGGTAAAATATATTA
AGAATAGCGAACTGTCAGAATCTCAACTGCCATGCCGAATTGCGGGCAGAAAATCTTCAGCAATCAAACCAACATCATGG
TTTAAATATAATCAAAAAGTGGAAGAGATTCTTGAGATTCTCGCCGCATCTGATGTATTAAAAACGATCCCACGAGCTTG
GAGGTGGTTGTCAGAGCCAAAACCAGAAGTTAAGGATTTGCCAATATTAACGAGTACACCTGATCAGCTTCTTGATTGTG
AAAAAGATATTGAAGATGTTTTAGAGCACGTAAAAGCATTCGCACTGTACATGAGAGAAAAAAACAAGAGTTAA

Upstream 100 bases:

>100_bases
CTTCTTCCACGCGTGGCATTGCGACCCCTGGAGTTGGGAAGAATGAACCGACCTCTGGTCGGTTTTTTCGTATCTGAAGC
CAAGGAATAAGAATAATATT

Downstream 100 bases:

>100_bases
TAGTGTTTTAATATAAAACCCTAAATCAGAACTACAAAGGTCGCTAAAATTTAGCGGCTTTTTTTGTTGCTTGTGATCAC
GTTTTAATTCAAATATAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MRTRIYIDGYNFYYGCLKGTPYKWLDLVKLFEEHIIPRSDVYNATLHDNVGIKYFTAEITNKAAADPNSVNDQRSYHHAL
YLHSENLLKTIKGSYAVDKVEYPKVEYYEAGIEKEPKDCARVKVWKLEEKQSDVNIAIEAVYDAVMDHTLEQIIFVTNDT
DIVPALEKIREHNQKSLRSPIKIGLVIPSKENNEYRKPNKSLSNLADWTVKYIKNSELSESQLPCRIAGRKSSAIKPTSW
FKYNQKVEEILEILAASDVLKTIPRAWRWLSEPKPEVKDLPILTSTPDQLLDCEKDIEDVLEHVKAFALYMREKNKS

Sequences:

>Translated_317_residues
MRTRIYIDGYNFYYGCLKGTPYKWLDLVKLFEEHIIPRSDVYNATLHDNVGIKYFTAEITNKAAADPNSVNDQRSYHHAL
YLHSENLLKTIKGSYAVDKVEYPKVEYYEAGIEKEPKDCARVKVWKLEEKQSDVNIAIEAVYDAVMDHTLEQIIFVTNDT
DIVPALEKIREHNQKSLRSPIKIGLVIPSKENNEYRKPNKSLSNLADWTVKYIKNSELSESQLPCRIAGRKSSAIKPTSW
FKYNQKVEEILEILAASDVLKTIPRAWRWLSEPKPEVKDLPILTSTPDQLLDCEKDIEDVLEHVKAFALYMREKNKS
>Mature_317_residues
MRTRIYIDGYNFYYGCLKGTPYKWLDLVKLFEEHIIPRSDVYNATLHDNVGIKYFTAEITNKAAADPNSVNDQRSYHHAL
YLHSENLLKTIKGSYAVDKVEYPKVEYYEAGIEKEPKDCARVKVWKLEEKQSDVNIAIEAVYDAVMDHTLEQIIFVTNDT
DIVPALEKIREHNQKSLRSPIKIGLVIPSKENNEYRKPNKSLSNLADWTVKYIKNSELSESQLPCRIAGRKSSAIKPTSW
FKYNQKVEEILEILAASDVLKTIPRAWRWLSEPKPEVKDLPILTSTPDQLLDCEKDIEDVLEHVKAFALYMREKNKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36699; Mature: 36699

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTRIYIDGYNFYYGCLKGTPYKWLDLVKLFEEHIIPRSDVYNATLHDNVGIKYFTAEIT
CCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEEECC
NKAAADPNSVNDQRSYHHALYLHSENLLKTIKGSYAVDKVEYPKVEYYEAGIEKEPKDCA
CCCCCCCCCCCCHHHHHEEEEEEHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHH
RVKVWKLEEKQSDVNIAIEAVYDAVMDHTLEQIIFVTNDTDIVPALEKIREHNQKSLRSP
HEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCC
IKIGLVIPSKENNEYRKPNKSLSNLADWTVKYIKNSELSESQLPCRIAGRKSSAIKPTSW
EEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHH
FKYNQKVEEILEILAASDVLKTIPRAWRWLSEPKPEVKDLPILTSTPDQLLDCEKDIEDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCEECCCCHHHHHHHHHHHHH
LEHVKAFALYMREKNKS
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRTRIYIDGYNFYYGCLKGTPYKWLDLVKLFEEHIIPRSDVYNATLHDNVGIKYFTAEIT
CCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEEECC
NKAAADPNSVNDQRSYHHALYLHSENLLKTIKGSYAVDKVEYPKVEYYEAGIEKEPKDCA
CCCCCCCCCCCCHHHHHEEEEEEHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHH
RVKVWKLEEKQSDVNIAIEAVYDAVMDHTLEQIIFVTNDTDIVPALEKIREHNQKSLRSP
HEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCC
IKIGLVIPSKENNEYRKPNKSLSNLADWTVKYIKNSELSESQLPCRIAGRKSSAIKPTSW
EEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHH
FKYNQKVEEILEILAASDVLKTIPRAWRWLSEPKPEVKDLPILTSTPDQLLDCEKDIEDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCEECCCCHHHHHHHHHHHHH
LEHVKAFALYMREKNKS
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA