| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209693661
Identifier: 209693661
GI number: 209693661
Start: 29602
End: 30555
Strand: Direct
Name: 209693661
Synonym: VSAL_I0028
Alternate gene names: NA
Gene position: 29602-30555 (Clockwise)
Preceding gene: 209693660
Following gene: 209693663
Centisome position: 0.89
GC content: 37.42
Gene sequence:
>954_bases ATGCGTACTCGAATCTATATTGATGGTTACAATTTTTATTATGGTTGCTTGAAAGGTACTCCATATAAATGGCTAGACCT AGTTAAACTCTTTGAAGAGCATATTATCCCTCGTTCTGATGTATACAATGCCACCTTACACGATAATGTAGGGATCAAAT ATTTTACCGCGGAGATAACCAATAAAGCAGCAGCAGACCCTAATTCAGTTAATGACCAACGTTCTTATCATCACGCGCTT TATCTCCATAGTGAAAATTTGCTAAAAACGATCAAAGGTAGCTACGCAGTTGATAAAGTCGAATACCCGAAAGTGGAGTA TTATGAGGCAGGCATCGAAAAAGAGCCAAAAGATTGTGCAAGAGTTAAGGTGTGGAAATTAGAAGAAAAACAGAGCGATG TGAATATAGCGATTGAAGCTGTCTATGACGCAGTTATGGATCATACGTTAGAACAAATTATCTTTGTTACCAATGATACT GATATTGTCCCCGCTTTAGAAAAAATCCGTGAACACAATCAAAAATCGCTACGCTCACCAATAAAAATTGGTCTTGTTAT CCCTTCCAAAGAGAATAATGAATATCGTAAACCTAATAAGTCACTGAGTAATTTGGCCGATTGGACGGTAAAATATATTA AGAATAGCGAACTGTCAGAATCTCAACTGCCATGCCGAATTGCGGGCAGAAAATCTTCAGCAATCAAACCAACATCATGG TTTAAATATAATCAAAAAGTGGAAGAGATTCTTGAGATTCTCGCCGCATCTGATGTATTAAAAACGATCCCACGAGCTTG GAGGTGGTTGTCAGAGCCAAAACCAGAAGTTAAGGATTTGCCAATATTAACGAGTACACCTGATCAGCTTCTTGATTGTG AAAAAGATATTGAAGATGTTTTAGAGCACGTAAAAGCATTCGCACTGTACATGAGAGAAAAAAACAAGAGTTAA
Upstream 100 bases:
>100_bases CTTCTTCCACGCGTGGCATTGCGACCCCTGGAGTTGGGAAGAATGAACCGACCTCTGGTCGGTTTTTTCGTATCTGAAGC CAAGGAATAAGAATAATATT
Downstream 100 bases:
>100_bases TAGTGTTTTAATATAAAACCCTAAATCAGAACTACAAAGGTCGCTAAAATTTAGCGGCTTTTTTTGTTGCTTGTGATCAC GTTTTAATTCAAATATAGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 317; Mature: 317
Protein sequence:
>317_residues MRTRIYIDGYNFYYGCLKGTPYKWLDLVKLFEEHIIPRSDVYNATLHDNVGIKYFTAEITNKAAADPNSVNDQRSYHHAL YLHSENLLKTIKGSYAVDKVEYPKVEYYEAGIEKEPKDCARVKVWKLEEKQSDVNIAIEAVYDAVMDHTLEQIIFVTNDT DIVPALEKIREHNQKSLRSPIKIGLVIPSKENNEYRKPNKSLSNLADWTVKYIKNSELSESQLPCRIAGRKSSAIKPTSW FKYNQKVEEILEILAASDVLKTIPRAWRWLSEPKPEVKDLPILTSTPDQLLDCEKDIEDVLEHVKAFALYMREKNKS
Sequences:
>Translated_317_residues MRTRIYIDGYNFYYGCLKGTPYKWLDLVKLFEEHIIPRSDVYNATLHDNVGIKYFTAEITNKAAADPNSVNDQRSYHHAL YLHSENLLKTIKGSYAVDKVEYPKVEYYEAGIEKEPKDCARVKVWKLEEKQSDVNIAIEAVYDAVMDHTLEQIIFVTNDT DIVPALEKIREHNQKSLRSPIKIGLVIPSKENNEYRKPNKSLSNLADWTVKYIKNSELSESQLPCRIAGRKSSAIKPTSW FKYNQKVEEILEILAASDVLKTIPRAWRWLSEPKPEVKDLPILTSTPDQLLDCEKDIEDVLEHVKAFALYMREKNKS >Mature_317_residues MRTRIYIDGYNFYYGCLKGTPYKWLDLVKLFEEHIIPRSDVYNATLHDNVGIKYFTAEITNKAAADPNSVNDQRSYHHAL YLHSENLLKTIKGSYAVDKVEYPKVEYYEAGIEKEPKDCARVKVWKLEEKQSDVNIAIEAVYDAVMDHTLEQIIFVTNDT DIVPALEKIREHNQKSLRSPIKIGLVIPSKENNEYRKPNKSLSNLADWTVKYIKNSELSESQLPCRIAGRKSSAIKPTSW FKYNQKVEEILEILAASDVLKTIPRAWRWLSEPKPEVKDLPILTSTPDQLLDCEKDIEDVLEHVKAFALYMREKNKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36699; Mature: 36699
Theoretical pI: Translated: 6.95; Mature: 6.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTRIYIDGYNFYYGCLKGTPYKWLDLVKLFEEHIIPRSDVYNATLHDNVGIKYFTAEIT CCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEEECC NKAAADPNSVNDQRSYHHALYLHSENLLKTIKGSYAVDKVEYPKVEYYEAGIEKEPKDCA CCCCCCCCCCCCHHHHHEEEEEEHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHH RVKVWKLEEKQSDVNIAIEAVYDAVMDHTLEQIIFVTNDTDIVPALEKIREHNQKSLRSP HEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCC IKIGLVIPSKENNEYRKPNKSLSNLADWTVKYIKNSELSESQLPCRIAGRKSSAIKPTSW EEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHH FKYNQKVEEILEILAASDVLKTIPRAWRWLSEPKPEVKDLPILTSTPDQLLDCEKDIEDV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCEECCCCHHHHHHHHHHHHH LEHVKAFALYMREKNKS HHHHHHHHHHHHHCCCC >Mature Secondary Structure MRTRIYIDGYNFYYGCLKGTPYKWLDLVKLFEEHIIPRSDVYNATLHDNVGIKYFTAEIT CCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEEECC NKAAADPNSVNDQRSYHHALYLHSENLLKTIKGSYAVDKVEYPKVEYYEAGIEKEPKDCA CCCCCCCCCCCCHHHHHEEEEEEHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHH RVKVWKLEEKQSDVNIAIEAVYDAVMDHTLEQIIFVTNDTDIVPALEKIREHNQKSLRSP HEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCC IKIGLVIPSKENNEYRKPNKSLSNLADWTVKYIKNSELSESQLPCRIAGRKSSAIKPTSW EEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHH FKYNQKVEEILEILAASDVLKTIPRAWRWLSEPKPEVKDLPILTSTPDQLLDCEKDIEDV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCEECCCCHHHHHHHHHHHHH LEHVKAFALYMREKNKS HHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA